Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01585

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS01580 and ABIE41_RS01585 are separated by 123 nucleotidesABIE41_RS01585 and ABIE41_RS01590 overlap by 7 nucleotides ABIE41_RS01580: ABIE41_RS01580 - polyamine ABC transporter substrate-binding protein, at 314,807 to 315,844 _RS01580 ABIE41_RS01585: ABIE41_RS01585 - LysR substrate-binding domain-containing protein, at 315,968 to 316,885 _RS01585 ABIE41_RS01590: ABIE41_RS01590 - efflux transporter outer membrane subunit, at 316,879 to 318,402 _RS01590 Position (kb) 315 316 317Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 314.989 kb on + strand, within ABIE41_RS01580at 315.222 kb on + strand, within ABIE41_RS01580at 315.222 kb on + strand, within ABIE41_RS01580at 315.223 kb on - strand, within ABIE41_RS01580at 315.223 kb on - strand, within ABIE41_RS01580at 315.333 kb on + strand, within ABIE41_RS01580at 315.333 kb on + strand, within ABIE41_RS01580at 315.334 kb on - strand, within ABIE41_RS01580at 315.373 kb on - strand, within ABIE41_RS01580at 315.373 kb on - strand, within ABIE41_RS01580at 315.373 kb on - strand, within ABIE41_RS01580at 315.373 kb on - strand, within ABIE41_RS01580at 315.445 kb on - strand, within ABIE41_RS01580at 315.445 kb on - strand, within ABIE41_RS01580at 315.522 kb on + strand, within ABIE41_RS01580at 315.605 kb on + strand, within ABIE41_RS01580at 315.665 kb on + strand, within ABIE41_RS01580at 315.666 kb on - strand, within ABIE41_RS01580at 315.669 kb on + strand, within ABIE41_RS01580at 315.669 kb on + strand, within ABIE41_RS01580at 315.670 kb on - strand, within ABIE41_RS01580at 315.670 kb on - strand, within ABIE41_RS01580at 315.670 kb on - strand, within ABIE41_RS01580at 315.748 kb on - strandat 315.748 kb on - strandat 315.940 kb on + strandat 315.940 kb on + strandat 315.941 kb on - strandat 316.005 kb on + strandat 316.005 kb on + strandat 316.005 kb on + strandat 316.005 kb on + strandat 316.005 kb on + strandat 316.005 kb on + strandat 316.045 kb on - strandat 316.048 kb on + strandat 316.048 kb on + strandat 316.049 kb on - strandat 316.049 kb on - strandat 316.091 kb on + strand, within ABIE41_RS01585at 316.091 kb on + strand, within ABIE41_RS01585at 316.091 kb on + strand, within ABIE41_RS01585at 316.091 kb on + strand, within ABIE41_RS01585at 316.091 kb on + strand, within ABIE41_RS01585at 316.092 kb on - strand, within ABIE41_RS01585at 316.092 kb on - strand, within ABIE41_RS01585at 316.092 kb on - strand, within ABIE41_RS01585at 316.092 kb on - strand, within ABIE41_RS01585at 316.092 kb on - strand, within ABIE41_RS01585at 316.092 kb on - strand, within ABIE41_RS01585at 316.162 kb on - strand, within ABIE41_RS01585at 316.163 kb on + strand, within ABIE41_RS01585at 316.164 kb on - strand, within ABIE41_RS01585at 316.273 kb on + strand, within ABIE41_RS01585at 316.274 kb on - strand, within ABIE41_RS01585at 316.307 kb on + strand, within ABIE41_RS01585at 316.307 kb on + strand, within ABIE41_RS01585at 316.307 kb on + strand, within ABIE41_RS01585at 316.308 kb on - strand, within ABIE41_RS01585at 316.344 kb on - strand, within ABIE41_RS01585at 316.344 kb on - strand, within ABIE41_RS01585at 316.413 kb on - strand, within ABIE41_RS01585at 316.433 kb on - strand, within ABIE41_RS01585at 316.433 kb on - strand, within ABIE41_RS01585at 316.433 kb on - strand, within ABIE41_RS01585at 316.433 kb on - strand, within ABIE41_RS01585at 316.697 kb on + strand, within ABIE41_RS01585at 316.760 kb on + strand, within ABIE41_RS01585at 316.760 kb on + strand, within ABIE41_RS01585at 316.760 kb on + strand, within ABIE41_RS01585at 316.760 kb on + strand, within ABIE41_RS01585at 316.760 kb on + strand, within ABIE41_RS01585at 316.883 kb on + strandat 317.039 kb on + strand, within ABIE41_RS01590at 317.040 kb on - strand, within ABIE41_RS01590at 317.093 kb on + strand, within ABIE41_RS01590at 317.093 kb on + strand, within ABIE41_RS01590at 317.093 kb on + strand, within ABIE41_RS01590at 317.093 kb on + strand, within ABIE41_RS01590at 317.094 kb on - strand, within ABIE41_RS01590at 317.094 kb on - strand, within ABIE41_RS01590at 317.604 kb on + strand, within ABIE41_RS01590at 317.630 kb on + strand, within ABIE41_RS01590at 317.630 kb on + strand, within ABIE41_RS01590at 317.631 kb on - strand, within ABIE41_RS01590at 317.631 kb on - strand, within ABIE41_RS01590at 317.631 kb on - strand, within ABIE41_RS01590at 317.631 kb on - strand, within ABIE41_RS01590at 317.631 kb on - strand, within ABIE41_RS01590at 317.816 kb on + strand, within ABIE41_RS01590at 317.816 kb on + strand, within ABIE41_RS01590at 317.816 kb on + strand, within ABIE41_RS01590at 317.816 kb on + strand, within ABIE41_RS01590at 317.816 kb on + strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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314,989 + ABIE41_RS01580 0.18 +0.1
315,222 + ABIE41_RS01580 0.40 +0.5
315,222 + ABIE41_RS01580 0.40 -0.4
315,223 - ABIE41_RS01580 0.40 +0.1
315,223 - ABIE41_RS01580 0.40 -2.4
315,333 + ABIE41_RS01580 0.51 -2.3
315,333 + ABIE41_RS01580 0.51 -0.8
315,334 - ABIE41_RS01580 0.51 +0.4
315,373 - ABIE41_RS01580 0.55 +0.3
315,373 - ABIE41_RS01580 0.55 +3.1
315,373 - ABIE41_RS01580 0.55 +0.5
315,373 - ABIE41_RS01580 0.55 -0.3
315,445 - ABIE41_RS01580 0.61 +0.0
315,445 - ABIE41_RS01580 0.61 +0.4
315,522 + ABIE41_RS01580 0.69 +0.2
315,605 + ABIE41_RS01580 0.77 -0.4
315,665 + ABIE41_RS01580 0.83 +1.4
315,666 - ABIE41_RS01580 0.83 +0.4
315,669 + ABIE41_RS01580 0.83 +0.7
315,669 + ABIE41_RS01580 0.83 -0.3
315,670 - ABIE41_RS01580 0.83 +0.3
315,670 - ABIE41_RS01580 0.83 +0.5
315,670 - ABIE41_RS01580 0.83 -1.8
315,748 - +2.7
315,748 - +1.0
315,940 + -0.5
315,940 + -0.8
315,941 - +0.6
316,005 + -0.2
316,005 + -0.1
316,005 + -0.3
316,005 + +0.5
316,005 + -0.5
316,005 + -0.9
316,045 - -0.3
316,048 + +0.2
316,048 + -0.6
316,049 - +0.4
316,049 - -0.5
316,091 + ABIE41_RS01585 0.13 -0.6
316,091 + ABIE41_RS01585 0.13 +0.5
316,091 + ABIE41_RS01585 0.13 -1.8
316,091 + ABIE41_RS01585 0.13 -0.0
316,091 + ABIE41_RS01585 0.13 +1.0
316,092 - ABIE41_RS01585 0.14 +0.3
316,092 - ABIE41_RS01585 0.14 -0.5
316,092 - ABIE41_RS01585 0.14 -0.7
316,092 - ABIE41_RS01585 0.14 +0.5
316,092 - ABIE41_RS01585 0.14 -0.3
316,092 - ABIE41_RS01585 0.14 -0.6
316,162 - ABIE41_RS01585 0.21 +0.5
316,163 + ABIE41_RS01585 0.21 -0.0
316,164 - ABIE41_RS01585 0.21 +0.1
316,273 + ABIE41_RS01585 0.33 -0.1
316,274 - ABIE41_RS01585 0.33 +1.1
316,307 + ABIE41_RS01585 0.37 -3.5
316,307 + ABIE41_RS01585 0.37 +0.2
316,307 + ABIE41_RS01585 0.37 +0.4
316,308 - ABIE41_RS01585 0.37 +0.6
316,344 - ABIE41_RS01585 0.41 -2.1
316,344 - ABIE41_RS01585 0.41 -1.6
316,413 - ABIE41_RS01585 0.48 -0.5
316,433 - ABIE41_RS01585 0.51 -3.2
316,433 - ABIE41_RS01585 0.51 +0.3
316,433 - ABIE41_RS01585 0.51 +0.9
316,433 - ABIE41_RS01585 0.51 -0.3
316,697 + ABIE41_RS01585 0.79 -0.8
316,760 + ABIE41_RS01585 0.86 -0.2
316,760 + ABIE41_RS01585 0.86 -0.8
316,760 + ABIE41_RS01585 0.86 -0.2
316,760 + ABIE41_RS01585 0.86 -0.0
316,760 + ABIE41_RS01585 0.86 +0.3
316,883 + +2.0
317,039 + ABIE41_RS01590 0.10 -0.5
317,040 - ABIE41_RS01590 0.11 -0.3
317,093 + ABIE41_RS01590 0.14 -0.8
317,093 + ABIE41_RS01590 0.14 +0.8
317,093 + ABIE41_RS01590 0.14 -0.8
317,093 + ABIE41_RS01590 0.14 -2.5
317,094 - ABIE41_RS01590 0.14 +0.1
317,094 - ABIE41_RS01590 0.14 -1.0
317,604 + ABIE41_RS01590 0.48 +0.2
317,630 + ABIE41_RS01590 0.49 -0.7
317,630 + ABIE41_RS01590 0.49 +0.0
317,631 - ABIE41_RS01590 0.49 +0.6
317,631 - ABIE41_RS01590 0.49 +1.1
317,631 - ABIE41_RS01590 0.49 -1.2
317,631 - ABIE41_RS01590 0.49 +0.5
317,631 - ABIE41_RS01590 0.49 +1.2
317,816 + ABIE41_RS01590 0.61 +0.6
317,816 + ABIE41_RS01590 0.61 +1.4
317,816 + ABIE41_RS01590 0.61 -0.4
317,816 + ABIE41_RS01590 0.61 -2.0
317,816 + ABIE41_RS01590 0.61 -0.3
317,817 - ABIE41_RS01590 0.62 -0.7
317,817 - ABIE41_RS01590 0.62 -3.2
317,817 - ABIE41_RS01590 0.62 +0.3
317,817 - ABIE41_RS01590 0.62 -0.0
317,817 - ABIE41_RS01590 0.62 +0.3
317,817 - ABIE41_RS01590 0.62 -0.7
317,817 - ABIE41_RS01590 0.62 -0.6
317,817 - ABIE41_RS01590 0.62 -0.2
317,817 - ABIE41_RS01590 0.62 +0.7
317,817 - ABIE41_RS01590 0.62 -0.6
317,817 - ABIE41_RS01590 0.62 -3.2

Or see this region's nucleotide sequence