Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28980 and ABID97_RS28985 are separated by 5 nucleotides ABID97_RS28985 and ABID97_RS28990 are separated by 13 nucleotides ABID97_RS28990 and ABID97_RS28995 are separated by 128 nucleotides ABID97_RS28995 and ABID97_RS29000 are separated by 76 nucleotides ABID97_RS29000 and ABID97_RS29005 are separated by 16 nucleotides
ABID97_RS28980: ABID97_RS28980 - RNA methyltransferase, at 715,851 to 716,876
_RS28980
ABID97_RS28985: ABID97_RS28985 - alpha/beta hydrolase, at 716,882 to 717,634
_RS28985
ABID97_RS28990: ABID97_RS28990 - aspartate 1-decarboxylase, at 717,648 to 718,049
_RS28990
ABID97_RS28995: ABID97_RS28995 - dodecin, at 718,178 to 718,384
_RS28995
ABID97_RS29000: ABID97_RS29000 - YciI family protein, at 718,461 to 718,754
_RS29000
ABID97_RS29005: ABID97_RS29005 - tripartite tricarboxylate transporter substrate binding protein, at 718,771 to 719,736
_RS29005
Position (kb) 717
718
719 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 716.661 kb on + strand, within ABID97_RS28980 at 716.662 kb on - strand, within ABID97_RS28980 at 716.662 kb on - strand, within ABID97_RS28980 at 716.662 kb on - strand, within ABID97_RS28980 at 717.462 kb on + strand, within ABID97_RS28985 at 717.462 kb on + strand, within ABID97_RS28985 at 717.748 kb on + strand, within ABID97_RS28990 at 717.877 kb on + strand, within ABID97_RS28990 at 717.877 kb on + strand, within ABID97_RS28990 at 717.878 kb on - strand, within ABID97_RS28990 at 717.986 kb on - strand, within ABID97_RS28990 at 718.180 kb on - strand at 718.368 kb on + strand at 718.368 kb on + strand at 718.368 kb on + strand at 718.368 kb on + strand at 718.369 kb on - strand at 718.369 kb on - strand at 718.675 kb on + strand, within ABID97_RS29000
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 716,661 + ABID97_RS28980 0.79 +0.8 716,662 - ABID97_RS28980 0.79 -0.2 716,662 - ABID97_RS28980 0.79 -0.7 716,662 - ABID97_RS28980 0.79 -1.9 717,462 + ABID97_RS28985 0.77 -0.4 717,462 + ABID97_RS28985 0.77 -0.9 717,748 + ABID97_RS28990 0.25 -2.1 717,877 + ABID97_RS28990 0.57 -2.1 717,877 + ABID97_RS28990 0.57 -1.5 717,878 - ABID97_RS28990 0.57 -1.2 717,986 - ABID97_RS28990 0.84 -2.8 718,180 - +0.9 718,368 + -0.1 718,368 + +0.4 718,368 + +1.0 718,368 + -0.6 718,369 - +2.2 718,369 - -0.3 718,675 + ABID97_RS29000 0.73 +0.2
Or see this region's nucleotide sequence