Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27865

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27860 and ABID97_RS27865 are separated by 10 nucleotidesABID97_RS27865 and ABID97_RS27870 overlap by 4 nucleotides ABID97_RS27860: ABID97_RS27860 - acyl-CoA desaturase, at 492,943 to 493,974 _RS27860 ABID97_RS27865: ABID97_RS27865 - alpha/beta hydrolase family protein, at 493,985 to 495,031 _RS27865 ABID97_RS27870: ABID97_RS27870 - fatty acid desaturase, at 495,028 to 496,011 _RS27870 Position (kb) 493 494 495 496Strain fitness (log2 ratio) -1 0 1at 493.606 kb on + strand, within ABID97_RS27860at 494.860 kb on - strand, within ABID97_RS27865at 494.938 kb on - strandat 495.838 kb on - strand, within ABID97_RS27870at 495.867 kb on - strand, within ABID97_RS27870

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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493,606 + ABID97_RS27860 0.64 +0.4
494,860 - ABID97_RS27865 0.84 +0.0
494,938 - +0.2
495,838 - ABID97_RS27870 0.82 -0.2
495,867 - ABID97_RS27870 0.85 +0.4

Or see this region's nucleotide sequence