Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26600

Experiment: pyruvate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS26595 and ABID97_RS26600 are separated by 91 nucleotidesABID97_RS26600 and ABID97_RS26605 overlap by 4 nucleotides ABID97_RS26595: ABID97_RS26595 - cytochrome d ubiquinol oxidase subunit II, at 241,935 to 242,943 _RS26595 ABID97_RS26600: ABID97_RS26600 - ATP-binding protein, at 243,035 to 244,870 _RS26600 ABID97_RS26605: ABID97_RS26605 - sigma-54 dependent transcriptional regulator, at 244,867 to 246,231 _RS26605 Position (kb) 243 244 245Strain fitness (log2 ratio) -1 0 1at 242.200 kb on + strand, within ABID97_RS26595at 242.200 kb on + strand, within ABID97_RS26595at 242.389 kb on + strand, within ABID97_RS26595at 242.765 kb on - strand, within ABID97_RS26595at 242.774 kb on - strand, within ABID97_RS26595at 242.774 kb on - strand, within ABID97_RS26595at 242.885 kb on - strandat 243.025 kb on + strandat 243.260 kb on + strand, within ABID97_RS26600at 243.351 kb on - strand, within ABID97_RS26600at 243.521 kb on + strand, within ABID97_RS26600at 243.558 kb on - strand, within ABID97_RS26600at 245.578 kb on + strand, within ABID97_RS26605at 245.783 kb on - strand, within ABID97_RS26605

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
remove
242,200 + ABID97_RS26595 0.26 +0.4
242,200 + ABID97_RS26595 0.26 +0.2
242,389 + ABID97_RS26595 0.45 -1.1
242,765 - ABID97_RS26595 0.82 +0.2
242,774 - ABID97_RS26595 0.83 -1.2
242,774 - ABID97_RS26595 0.83 -0.3
242,885 - -1.0
243,025 + +0.6
243,260 + ABID97_RS26600 0.12 -0.1
243,351 - ABID97_RS26600 0.17 -0.3
243,521 + ABID97_RS26600 0.26 +1.0
243,558 - ABID97_RS26600 0.28 +0.1
245,578 + ABID97_RS26605 0.52 +0.0
245,783 - ABID97_RS26605 0.67 -0.9

Or see this region's nucleotide sequence