Strain Fitness in Variovorax sp. OAS795 around ABID97_RS23130

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS23125 and ABID97_RS23130 are separated by 19 nucleotidesABID97_RS23130 and ABID97_RS23135 are separated by 63 nucleotidesABID97_RS23135 and ABID97_RS23140 are separated by 19 nucleotides ABID97_RS23125: ABID97_RS23125 - AAA family ATPase, at 4,782,563 to 4,783,741 _RS23125 ABID97_RS23130: ABID97_RS23130 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 4,783,761 to 4,784,504 _RS23130 ABID97_RS23135: ABID97_RS23135 - imidazole glycerol phosphate synthase subunit HisH, at 4,784,568 to 4,785,224 _RS23135 ABID97_RS23140: ABID97_RS23140 - imidazoleglycerol-phosphate dehydratase HisB, at 4,785,244 to 4,785,867 _RS23140 Position (kb) 4783 4784 4785Strain fitness (log2 ratio) -1 0 1 2at 4782.852 kb on + strand, within ABID97_RS23125at 4782.853 kb on - strand, within ABID97_RS23125at 4783.074 kb on + strand, within ABID97_RS23125at 4783.074 kb on + strand, within ABID97_RS23125at 4783.074 kb on + strand, within ABID97_RS23125at 4783.074 kb on + strand, within ABID97_RS23125at 4783.074 kb on + strand, within ABID97_RS23125at 4783.075 kb on - strand, within ABID97_RS23125at 4783.075 kb on - strand, within ABID97_RS23125at 4783.075 kb on - strand, within ABID97_RS23125at 4783.075 kb on - strand, within ABID97_RS23125at 4783.078 kb on + strand, within ABID97_RS23125at 4783.078 kb on + strand, within ABID97_RS23125at 4783.131 kb on + strand, within ABID97_RS23125at 4783.132 kb on - strand, within ABID97_RS23125at 4783.132 kb on - strand, within ABID97_RS23125at 4783.132 kb on - strand, within ABID97_RS23125at 4783.198 kb on - strand, within ABID97_RS23125at 4783.462 kb on + strand, within ABID97_RS23125at 4783.613 kb on + strand, within ABID97_RS23125at 4783.630 kb on - strandat 4783.713 kb on + strandat 4783.713 kb on + strandat 4783.749 kb on + strandat 4784.562 kb on - strandat 4784.562 kb on - strandat 4784.562 kb on - strandat 4784.564 kb on - strandat 4784.564 kb on - strandat 4784.564 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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4,782,852 + ABID97_RS23125 0.25 -0.5
4,782,853 - ABID97_RS23125 0.25 -0.2
4,783,074 + ABID97_RS23125 0.43 +0.5
4,783,074 + ABID97_RS23125 0.43 +0.6
4,783,074 + ABID97_RS23125 0.43 +0.0
4,783,074 + ABID97_RS23125 0.43 -0.4
4,783,074 + ABID97_RS23125 0.43 +0.1
4,783,075 - ABID97_RS23125 0.43 +0.1
4,783,075 - ABID97_RS23125 0.43 +0.0
4,783,075 - ABID97_RS23125 0.43 -0.6
4,783,075 - ABID97_RS23125 0.43 +0.2
4,783,078 + ABID97_RS23125 0.44 -0.1
4,783,078 + ABID97_RS23125 0.44 +0.5
4,783,131 + ABID97_RS23125 0.48 +0.2
4,783,132 - ABID97_RS23125 0.48 +2.1
4,783,132 - ABID97_RS23125 0.48 +0.3
4,783,132 - ABID97_RS23125 0.48 +0.4
4,783,198 - ABID97_RS23125 0.54 +0.2
4,783,462 + ABID97_RS23125 0.76 +0.9
4,783,613 + ABID97_RS23125 0.89 +0.3
4,783,630 - -0.0
4,783,713 + +0.0
4,783,713 + +0.3
4,783,749 + +0.4
4,784,562 - +0.4
4,784,562 - +0.6
4,784,562 - -0.1
4,784,564 - -0.8
4,784,564 - -0.5
4,784,564 - +0.6

Or see this region's nucleotide sequence