Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21335

Experiment: pyruvate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS21330 and ABID97_RS21335 are separated by 21 nucleotidesABID97_RS21335 and ABID97_RS21340 are separated by 129 nucleotides ABID97_RS21330: ABID97_RS21330 - OmpA family protein, at 4,400,837 to 4,402,045 _RS21330 ABID97_RS21335: ABID97_RS21335 - hypothetical protein, at 4,402,067 to 4,402,435 _RS21335 ABID97_RS21340: ABID97_RS21340 - AEC family transporter, at 4,402,565 to 4,403,515 _RS21340 Position (kb) 4402 4403Strain fitness (log2 ratio) -1 0 1at 4401.282 kb on + strand, within ABID97_RS21330at 4401.283 kb on - strand, within ABID97_RS21330at 4401.295 kb on - strand, within ABID97_RS21330at 4401.295 kb on - strand, within ABID97_RS21330at 4401.295 kb on - strand, within ABID97_RS21330at 4401.295 kb on - strand, within ABID97_RS21330at 4401.474 kb on + strand, within ABID97_RS21330at 4401.475 kb on - strand, within ABID97_RS21330at 4401.675 kb on + strand, within ABID97_RS21330at 4401.675 kb on + strand, within ABID97_RS21330at 4401.676 kb on - strand, within ABID97_RS21330at 4402.061 kb on - strandat 4402.061 kb on - strandat 4402.509 kb on + strandat 4402.509 kb on + strandat 4402.509 kb on + strandat 4402.509 kb on + strandat 4403.221 kb on - strand, within ABID97_RS21340at 4403.221 kb on - strand, within ABID97_RS21340at 4403.221 kb on - strand, within ABID97_RS21340at 4403.224 kb on + strand, within ABID97_RS21340at 4403.311 kb on - strand, within ABID97_RS21340

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
remove
4,401,282 + ABID97_RS21330 0.37 +0.8
4,401,283 - ABID97_RS21330 0.37 -0.1
4,401,295 - ABID97_RS21330 0.38 -0.1
4,401,295 - ABID97_RS21330 0.38 -0.3
4,401,295 - ABID97_RS21330 0.38 +0.3
4,401,295 - ABID97_RS21330 0.38 +0.2
4,401,474 + ABID97_RS21330 0.53 +0.9
4,401,475 - ABID97_RS21330 0.53 +0.2
4,401,675 + ABID97_RS21330 0.69 -0.0
4,401,675 + ABID97_RS21330 0.69 +0.3
4,401,676 - ABID97_RS21330 0.69 -0.0
4,402,061 - +0.1
4,402,061 - -0.1
4,402,509 + -0.1
4,402,509 + +0.3
4,402,509 + +0.0
4,402,509 + +0.3
4,403,221 - ABID97_RS21340 0.69 +0.7
4,403,221 - ABID97_RS21340 0.69 -0.1
4,403,221 - ABID97_RS21340 0.69 +0.4
4,403,224 + ABID97_RS21340 0.69 -0.4
4,403,311 - ABID97_RS21340 0.78 +0.9

Or see this region's nucleotide sequence