Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12155

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12145 and ABID97_RS12150 are separated by 76 nucleotidesABID97_RS12150 and ABID97_RS12155 are separated by 27 nucleotidesABID97_RS12155 and ABID97_RS12160 overlap by 4 nucleotides ABID97_RS12145: ABID97_RS12145 - maltose alpha-D-glucosyltransferase, at 2,512,592 to 2,515,924 _RS12145 ABID97_RS12150: ABID97_RS12150 - hypothetical protein, at 2,516,001 to 2,516,756 _RS12150 ABID97_RS12155: ABID97_RS12155 - glycogen debranching protein GlgX, at 2,516,784 to 2,518,946 _RS12155 ABID97_RS12160: ABID97_RS12160 - malto-oligosyltrehalose trehalohydrolase, at 2,518,943 to 2,520,784 _RS12160 Position (kb) 2516 2517 2518 2519Strain fitness (log2 ratio) -1 0 1at 2515.830 kb on - strandat 2515.842 kb on - strandat 2516.313 kb on + strand, within ABID97_RS12150at 2516.313 kb on + strand, within ABID97_RS12150at 2516.314 kb on - strand, within ABID97_RS12150at 2516.992 kb on - strandat 2517.046 kb on - strand, within ABID97_RS12155at 2517.046 kb on - strand, within ABID97_RS12155at 2517.144 kb on + strand, within ABID97_RS12155at 2517.150 kb on + strand, within ABID97_RS12155at 2517.151 kb on - strand, within ABID97_RS12155at 2517.294 kb on + strand, within ABID97_RS12155at 2517.294 kb on + strand, within ABID97_RS12155at 2517.360 kb on + strand, within ABID97_RS12155at 2517.495 kb on + strand, within ABID97_RS12155at 2517.690 kb on + strand, within ABID97_RS12155at 2518.195 kb on - strand, within ABID97_RS12155at 2518.668 kb on + strand, within ABID97_RS12155at 2518.669 kb on - strand, within ABID97_RS12155at 2518.669 kb on - strand, within ABID97_RS12155at 2518.797 kb on - strandat 2519.141 kb on + strand, within ABID97_RS12160at 2519.141 kb on + strand, within ABID97_RS12160at 2519.142 kb on - strand, within ABID97_RS12160at 2519.142 kb on - strand, within ABID97_RS12160at 2519.298 kb on - strand, within ABID97_RS12160at 2519.553 kb on - strand, within ABID97_RS12160at 2519.702 kb on + strand, within ABID97_RS12160at 2519.703 kb on - strand, within ABID97_RS12160

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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2,515,830 - -0.5
2,515,842 - +0.8
2,516,313 + ABID97_RS12150 0.41 -0.3
2,516,313 + ABID97_RS12150 0.41 +0.1
2,516,314 - ABID97_RS12150 0.41 +0.4
2,516,992 - +0.6
2,517,046 - ABID97_RS12155 0.12 -0.1
2,517,046 - ABID97_RS12155 0.12 +0.0
2,517,144 + ABID97_RS12155 0.17 -0.5
2,517,150 + ABID97_RS12155 0.17 +0.2
2,517,151 - ABID97_RS12155 0.17 +0.1
2,517,294 + ABID97_RS12155 0.24 +0.5
2,517,294 + ABID97_RS12155 0.24 +0.3
2,517,360 + ABID97_RS12155 0.27 -0.0
2,517,495 + ABID97_RS12155 0.33 +0.1
2,517,690 + ABID97_RS12155 0.42 -0.4
2,518,195 - ABID97_RS12155 0.65 +0.1
2,518,668 + ABID97_RS12155 0.87 -0.6
2,518,669 - ABID97_RS12155 0.87 -0.6
2,518,669 - ABID97_RS12155 0.87 +0.0
2,518,797 - +0.0
2,519,141 + ABID97_RS12160 0.11 +0.2
2,519,141 + ABID97_RS12160 0.11 -0.4
2,519,142 - ABID97_RS12160 0.11 +0.5
2,519,142 - ABID97_RS12160 0.11 -0.1
2,519,298 - ABID97_RS12160 0.19 -0.3
2,519,553 - ABID97_RS12160 0.33 +0.2
2,519,702 + ABID97_RS12160 0.41 -0.1
2,519,703 - ABID97_RS12160 0.41 +0.2

Or see this region's nucleotide sequence