Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12145 and ABID97_RS12150 are separated by 76 nucleotides ABID97_RS12150 and ABID97_RS12155 are separated by 27 nucleotides ABID97_RS12155 and ABID97_RS12160 overlap by 4 nucleotides
ABID97_RS12145: ABID97_RS12145 - maltose alpha-D-glucosyltransferase, at 2,512,592 to 2,515,924
_RS12145
ABID97_RS12150: ABID97_RS12150 - hypothetical protein, at 2,516,001 to 2,516,756
_RS12150
ABID97_RS12155: ABID97_RS12155 - glycogen debranching protein GlgX, at 2,516,784 to 2,518,946
_RS12155
ABID97_RS12160: ABID97_RS12160 - malto-oligosyltrehalose trehalohydrolase, at 2,518,943 to 2,520,784
_RS12160
Position (kb)
2516
2517
2518
2519 Strain fitness (log2 ratio)
-1
0
1 at 2515.830 kb on - strand at 2515.842 kb on - strand at 2516.313 kb on + strand, within ABID97_RS12150 at 2516.313 kb on + strand, within ABID97_RS12150 at 2516.314 kb on - strand, within ABID97_RS12150 at 2516.992 kb on - strand at 2517.046 kb on - strand, within ABID97_RS12155 at 2517.046 kb on - strand, within ABID97_RS12155 at 2517.144 kb on + strand, within ABID97_RS12155 at 2517.150 kb on + strand, within ABID97_RS12155 at 2517.151 kb on - strand, within ABID97_RS12155 at 2517.294 kb on + strand, within ABID97_RS12155 at 2517.294 kb on + strand, within ABID97_RS12155 at 2517.360 kb on + strand, within ABID97_RS12155 at 2517.495 kb on + strand, within ABID97_RS12155 at 2517.690 kb on + strand, within ABID97_RS12155 at 2518.195 kb on - strand, within ABID97_RS12155 at 2518.668 kb on + strand, within ABID97_RS12155 at 2518.669 kb on - strand, within ABID97_RS12155 at 2518.669 kb on - strand, within ABID97_RS12155 at 2518.797 kb on - strand at 2519.141 kb on + strand, within ABID97_RS12160 at 2519.141 kb on + strand, within ABID97_RS12160 at 2519.142 kb on - strand, within ABID97_RS12160 at 2519.142 kb on - strand, within ABID97_RS12160 at 2519.298 kb on - strand, within ABID97_RS12160 at 2519.553 kb on - strand, within ABID97_RS12160 at 2519.702 kb on + strand, within ABID97_RS12160 at 2519.703 kb on - strand, within ABID97_RS12160
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 2,515,830 - -0.5 2,515,842 - +0.8 2,516,313 + ABID97_RS12150 0.41 -0.3 2,516,313 + ABID97_RS12150 0.41 +0.1 2,516,314 - ABID97_RS12150 0.41 +0.4 2,516,992 - +0.6 2,517,046 - ABID97_RS12155 0.12 -0.1 2,517,046 - ABID97_RS12155 0.12 +0.0 2,517,144 + ABID97_RS12155 0.17 -0.5 2,517,150 + ABID97_RS12155 0.17 +0.2 2,517,151 - ABID97_RS12155 0.17 +0.1 2,517,294 + ABID97_RS12155 0.24 +0.5 2,517,294 + ABID97_RS12155 0.24 +0.3 2,517,360 + ABID97_RS12155 0.27 -0.0 2,517,495 + ABID97_RS12155 0.33 +0.1 2,517,690 + ABID97_RS12155 0.42 -0.4 2,518,195 - ABID97_RS12155 0.65 +0.1 2,518,668 + ABID97_RS12155 0.87 -0.6 2,518,669 - ABID97_RS12155 0.87 -0.6 2,518,669 - ABID97_RS12155 0.87 +0.0 2,518,797 - +0.0 2,519,141 + ABID97_RS12160 0.11 +0.2 2,519,141 + ABID97_RS12160 0.11 -0.4 2,519,142 - ABID97_RS12160 0.11 +0.5 2,519,142 - ABID97_RS12160 0.11 -0.1 2,519,298 - ABID97_RS12160 0.19 -0.3 2,519,553 - ABID97_RS12160 0.33 +0.2 2,519,702 + ABID97_RS12160 0.41 -0.1 2,519,703 - ABID97_RS12160 0.41 +0.2
Or see this region's nucleotide sequence