Strain Fitness in Pseudomonas sp. RS175 around PFR28_00604

Experiment: L-Isoleucine carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00603 and PFR28_00604 are separated by 270 nucleotidesPFR28_00604 and PFR28_00605 are separated by 206 nucleotides PFR28_00603: PFR28_00603 - hypothetical protein, at 640,775 to 642,013 _00603 PFR28_00604: PFR28_00604 - hypothetical protein, at 642,284 to 643,627 _00604 PFR28_00605: PFR28_00605 - hypothetical protein, at 643,834 to 645,885 _00605 Position (kb) 642 643 644Strain fitness (log2 ratio) -2 -1 0 1 2at 641.345 kb on + strand, within PFR28_00603at 641.345 kb on + strand, within PFR28_00603at 641.346 kb on - strand, within PFR28_00603at 641.346 kb on - strand, within PFR28_00603at 641.346 kb on - strand, within PFR28_00603at 641.346 kb on - strand, within PFR28_00603at 641.346 kb on - strand, within PFR28_00603at 641.346 kb on - strand, within PFR28_00603at 641.366 kb on + strand, within PFR28_00603at 641.367 kb on - strand, within PFR28_00603at 641.367 kb on - strand, within PFR28_00603at 641.367 kb on - strand, within PFR28_00603at 641.623 kb on + strand, within PFR28_00603at 641.623 kb on + strand, within PFR28_00603at 641.642 kb on + strand, within PFR28_00603at 641.643 kb on - strand, within PFR28_00603at 641.724 kb on + strand, within PFR28_00603at 641.725 kb on - strand, within PFR28_00603at 641.726 kb on + strand, within PFR28_00603at 641.726 kb on + strand, within PFR28_00603at 641.726 kb on + strand, within PFR28_00603at 641.726 kb on + strand, within PFR28_00603at 641.726 kb on + strand, within PFR28_00603at 641.726 kb on + strand, within PFR28_00603at 641.726 kb on + strand, within PFR28_00603at 641.726 kb on + strand, within PFR28_00603at 641.726 kb on + strand, within PFR28_00603at 641.726 kb on + strand, within PFR28_00603at 641.726 kb on + strand, within PFR28_00603at 641.727 kb on - strand, within PFR28_00603at 641.727 kb on - strand, within PFR28_00603at 641.727 kb on - strand, within PFR28_00603at 641.727 kb on - strand, within PFR28_00603at 641.727 kb on - strand, within PFR28_00603at 641.733 kb on + strand, within PFR28_00603at 641.733 kb on + strand, within PFR28_00603at 641.733 kb on + strand, within PFR28_00603at 641.733 kb on + strand, within PFR28_00603at 641.733 kb on + strand, within PFR28_00603at 641.733 kb on + strand, within PFR28_00603at 641.733 kb on + strand, within PFR28_00603at 641.734 kb on - strand, within PFR28_00603at 641.734 kb on - strand, within PFR28_00603at 641.734 kb on - strand, within PFR28_00603at 641.734 kb on - strand, within PFR28_00603at 641.734 kb on - strand, within PFR28_00603at 641.734 kb on - strand, within PFR28_00603at 641.734 kb on - strand, within PFR28_00603at 641.734 kb on - strand, within PFR28_00603at 641.734 kb on - strand, within PFR28_00603at 641.734 kb on - strand, within PFR28_00603at 641.862 kb on - strand, within PFR28_00603at 641.873 kb on + strand, within PFR28_00603at 642.132 kb on + strandat 642.132 kb on + strandat 642.158 kb on + strandat 642.158 kb on + strandat 642.158 kb on + strandat 642.158 kb on + strandat 642.158 kb on + strandat 642.158 kb on + strandat 642.158 kb on + strandat 642.159 kb on - strandat 642.159 kb on - strandat 642.159 kb on - strandat 642.159 kb on - strandat 642.159 kb on - strandat 642.175 kb on - strandat 642.175 kb on - strandat 642.190 kb on + strandat 642.190 kb on + strandat 642.190 kb on + strandat 642.190 kb on + strandat 642.190 kb on + strandat 642.191 kb on - strandat 642.191 kb on - strandat 642.191 kb on - strandat 642.191 kb on - strandat 642.191 kb on - strandat 642.439 kb on - strand, within PFR28_00604at 642.439 kb on - strand, within PFR28_00604at 642.594 kb on + strand, within PFR28_00604at 642.595 kb on - strand, within PFR28_00604at 642.606 kb on + strand, within PFR28_00604at 642.613 kb on + strand, within PFR28_00604at 642.613 kb on + strand, within PFR28_00604at 642.613 kb on + strand, within PFR28_00604at 642.614 kb on - strand, within PFR28_00604at 642.614 kb on - strand, within PFR28_00604at 642.614 kb on - strand, within PFR28_00604at 642.614 kb on - strand, within PFR28_00604at 642.614 kb on - strand, within PFR28_00604at 642.614 kb on - strand, within PFR28_00604at 642.614 kb on - strand, within PFR28_00604at 642.614 kb on - strand, within PFR28_00604at 642.617 kb on + strand, within PFR28_00604at 642.617 kb on + strand, within PFR28_00604at 642.617 kb on + strand, within PFR28_00604at 642.617 kb on + strand, within PFR28_00604at 642.617 kb on + strand, within PFR28_00604at 642.617 kb on + strand, within PFR28_00604at 642.617 kb on + strand, within PFR28_00604at 642.617 kb on + strand, within PFR28_00604at 642.617 kb on + strand, within PFR28_00604at 642.617 kb on + strand, within PFR28_00604at 642.618 kb on - strand, within PFR28_00604at 642.618 kb on - strand, within PFR28_00604at 642.618 kb on - strand, within PFR28_00604at 642.618 kb on - strand, within PFR28_00604at 642.618 kb on - strand, within PFR28_00604at 642.618 kb on - strand, within PFR28_00604at 642.618 kb on - strand, within PFR28_00604at 642.618 kb on - strand, within PFR28_00604at 642.618 kb on - strand, within PFR28_00604at 642.618 kb on - strand, within PFR28_00604at 642.618 kb on - strand, within PFR28_00604at 642.618 kb on - strand, within PFR28_00604at 642.633 kb on + strand, within PFR28_00604at 642.633 kb on + strand, within PFR28_00604at 642.633 kb on + strand, within PFR28_00604at 642.634 kb on - strand, within PFR28_00604at 642.634 kb on - strand, within PFR28_00604at 642.634 kb on - strand, within PFR28_00604at 642.645 kb on + strand, within PFR28_00604at 642.811 kb on - strand, within PFR28_00604at 642.891 kb on + strand, within PFR28_00604at 642.892 kb on - strand, within PFR28_00604at 642.892 kb on - strand, within PFR28_00604at 642.942 kb on + strand, within PFR28_00604at 642.943 kb on - strand, within PFR28_00604at 643.024 kb on - strand, within PFR28_00604at 643.183 kb on - strand, within PFR28_00604at 643.197 kb on + strand, within PFR28_00604at 643.197 kb on + strand, within PFR28_00604at 643.197 kb on + strand, within PFR28_00604at 643.197 kb on + strand, within PFR28_00604at 643.198 kb on - strand, within PFR28_00604at 643.198 kb on - strand, within PFR28_00604at 643.293 kb on + strand, within PFR28_00604at 643.293 kb on + strand, within PFR28_00604at 643.294 kb on - strand, within PFR28_00604at 643.294 kb on - strand, within PFR28_00604at 643.414 kb on - strand, within PFR28_00604at 643.422 kb on + strand, within PFR28_00604at 643.422 kb on + strand, within PFR28_00604at 643.423 kb on - strand, within PFR28_00604at 643.423 kb on - strand, within PFR28_00604at 643.423 kb on - strand, within PFR28_00604at 643.582 kb on + strandat 643.582 kb on + strandat 643.583 kb on - strandat 643.583 kb on - strandat 643.583 kb on - strandat 643.618 kb on + strandat 643.618 kb on + strandat 643.618 kb on + strandat 643.618 kb on + strandat 643.618 kb on + strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.619 kb on - strandat 643.709 kb on - strandat 643.714 kb on + strandat 643.729 kb on + strandat 643.910 kb on + strandat 643.910 kb on + strandat 643.910 kb on + strandat 643.910 kb on + strandat 643.910 kb on + strandat 643.910 kb on + strandat 643.910 kb on + strandat 643.911 kb on - strandat 643.911 kb on - strandat 643.911 kb on - strandat 643.913 kb on + strandat 643.913 kb on + strandat 643.913 kb on + strandat 643.913 kb on + strandat 643.913 kb on + strandat 643.913 kb on + strandat 643.914 kb on - strandat 643.914 kb on - strandat 643.914 kb on - strandat 643.914 kb on - strandat 643.914 kb on - strandat 643.914 kb on - strandat 643.914 kb on - strandat 643.914 kb on - strandat 643.914 kb on - strandat 643.916 kb on + strandat 643.916 kb on + strandat 643.916 kb on + strandat 643.916 kb on + strandat 643.952 kb on + strandat 643.952 kb on + strandat 643.952 kb on + strandat 643.952 kb on + strandat 643.952 kb on + strandat 643.952 kb on + strandat 643.952 kb on + strandat 643.952 kb on + strandat 643.952 kb on + strandat 643.952 kb on + strandat 643.952 kb on + strandat 643.952 kb on + strandat 643.952 kb on + strandat 643.953 kb on - strandat 643.953 kb on - strandat 643.953 kb on - strandat 643.953 kb on - strandat 643.953 kb on - strandat 643.953 kb on - strandat 643.953 kb on - strandat 643.953 kb on - strandat 643.953 kb on - strandat 643.953 kb on - strandat 643.953 kb on - strandat 643.953 kb on - strandat 643.953 kb on - strandat 644.121 kb on - strand, within PFR28_00605at 644.121 kb on - strand, within PFR28_00605at 644.135 kb on + strand, within PFR28_00605at 644.191 kb on + strand, within PFR28_00605at 644.191 kb on + strand, within PFR28_00605at 644.191 kb on + strand, within PFR28_00605at 644.191 kb on + strand, within PFR28_00605at 644.191 kb on + strand, within PFR28_00605at 644.191 kb on + strand, within PFR28_00605at 644.191 kb on + strand, within PFR28_00605at 644.192 kb on - strand, within PFR28_00605at 644.192 kb on - strand, within PFR28_00605at 644.192 kb on - strand, within PFR28_00605at 644.192 kb on - strand, within PFR28_00605at 644.192 kb on - strand, within PFR28_00605at 644.192 kb on - strand, within PFR28_00605at 644.192 kb on - strand, within PFR28_00605at 644.192 kb on - strand, within PFR28_00605at 644.544 kb on - strand, within PFR28_00605at 644.561 kb on + strand, within PFR28_00605at 644.561 kb on + strand, within PFR28_00605at 644.561 kb on + strand, within PFR28_00605at 644.561 kb on + strand, within PFR28_00605at 644.561 kb on + strand, within PFR28_00605at 644.561 kb on + strand, within PFR28_00605at 644.562 kb on - strand, within PFR28_00605at 644.562 kb on - strand, within PFR28_00605at 644.562 kb on - strand, within PFR28_00605

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine carbon 10 mM
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641,345 + PFR28_00603 0.46 -0.2
641,345 + PFR28_00603 0.46 -0.2
641,346 - PFR28_00603 0.46 -0.7
641,346 - PFR28_00603 0.46 -1.1
641,346 - PFR28_00603 0.46 -0.6
641,346 - PFR28_00603 0.46 -1.3
641,346 - PFR28_00603 0.46 +0.4
641,346 - PFR28_00603 0.46 -1.1
641,366 + PFR28_00603 0.48 +0.5
641,367 - PFR28_00603 0.48 -0.8
641,367 - PFR28_00603 0.48 -2.2
641,367 - PFR28_00603 0.48 -0.8
641,623 + PFR28_00603 0.68 -1.0
641,623 + PFR28_00603 0.68 +0.1
641,642 + PFR28_00603 0.70 +0.3
641,643 - PFR28_00603 0.70 -0.2
641,724 + PFR28_00603 0.77 +1.3
641,725 - PFR28_00603 0.77 -1.6
641,726 + PFR28_00603 0.77 +0.7
641,726 + PFR28_00603 0.77 +0.2
641,726 + PFR28_00603 0.77 +1.8
641,726 + PFR28_00603 0.77 +0.1
641,726 + PFR28_00603 0.77 +0.4
641,726 + PFR28_00603 0.77 +0.4
641,726 + PFR28_00603 0.77 +0.6
641,726 + PFR28_00603 0.77 -0.0
641,726 + PFR28_00603 0.77 -0.0
641,726 + PFR28_00603 0.77 -1.0
641,726 + PFR28_00603 0.77 -2.2
641,727 - PFR28_00603 0.77 -1.7
641,727 - PFR28_00603 0.77 -0.1
641,727 - PFR28_00603 0.77 +0.2
641,727 - PFR28_00603 0.77 +0.8
641,727 - PFR28_00603 0.77 +0.1
641,733 + PFR28_00603 0.77 -0.1
641,733 + PFR28_00603 0.77 +0.1
641,733 + PFR28_00603 0.77 +0.8
641,733 + PFR28_00603 0.77 -0.8
641,733 + PFR28_00603 0.77 -0.7
641,733 + PFR28_00603 0.77 +0.8
641,733 + PFR28_00603 0.77 +0.2
641,734 - PFR28_00603 0.77 +0.9
641,734 - PFR28_00603 0.77 +0.0
641,734 - PFR28_00603 0.77 +1.5
641,734 - PFR28_00603 0.77 -0.7
641,734 - PFR28_00603 0.77 +0.0
641,734 - PFR28_00603 0.77 +0.9
641,734 - PFR28_00603 0.77 -0.0
641,734 - PFR28_00603 0.77 +0.1
641,734 - PFR28_00603 0.77 +0.0
641,734 - PFR28_00603 0.77 -0.0
641,862 - PFR28_00603 0.88 +1.2
641,873 + PFR28_00603 0.89 +1.9
642,132 + -0.1
642,132 + -1.5
642,158 + -1.0
642,158 + +0.3
642,158 + +1.3
642,158 + -1.9
642,158 + +0.1
642,158 + -0.4
642,158 + +0.0
642,159 - +0.0
642,159 - +1.4
642,159 - -0.8
642,159 - -1.4
642,159 - +0.7
642,175 - +0.4
642,175 - +1.1
642,190 + -0.3
642,190 + -0.3
642,190 + -0.5
642,190 + +0.3
642,190 + +0.2
642,191 - +0.7
642,191 - +0.7
642,191 - -0.6
642,191 - -0.3
642,191 - +0.8
642,439 - PFR28_00604 0.12 +0.8
642,439 - PFR28_00604 0.12 -0.5
642,594 + PFR28_00604 0.23 -0.7
642,595 - PFR28_00604 0.23 -0.8
642,606 + PFR28_00604 0.24 +0.1
642,613 + PFR28_00604 0.24 -1.5
642,613 + PFR28_00604 0.24 +0.2
642,613 + PFR28_00604 0.24 +0.0
642,614 - PFR28_00604 0.25 +0.8
642,614 - PFR28_00604 0.25 -0.3
642,614 - PFR28_00604 0.25 -0.4
642,614 - PFR28_00604 0.25 -0.0
642,614 - PFR28_00604 0.25 -0.2
642,614 - PFR28_00604 0.25 -0.1
642,614 - PFR28_00604 0.25 -0.1
642,614 - PFR28_00604 0.25 -0.3
642,617 + PFR28_00604 0.25 -1.8
642,617 + PFR28_00604 0.25 -0.2
642,617 + PFR28_00604 0.25 -0.0
642,617 + PFR28_00604 0.25 +0.2
642,617 + PFR28_00604 0.25 -0.2
642,617 + PFR28_00604 0.25 +0.6
642,617 + PFR28_00604 0.25 -1.7
642,617 + PFR28_00604 0.25 +1.4
642,617 + PFR28_00604 0.25 +0.8
642,617 + PFR28_00604 0.25 +0.0
642,618 - PFR28_00604 0.25 -0.4
642,618 - PFR28_00604 0.25 -0.4
642,618 - PFR28_00604 0.25 -0.9
642,618 - PFR28_00604 0.25 +0.9
642,618 - PFR28_00604 0.25 +0.5
642,618 - PFR28_00604 0.25 +0.4
642,618 - PFR28_00604 0.25 -0.1
642,618 - PFR28_00604 0.25 -0.2
642,618 - PFR28_00604 0.25 -0.1
642,618 - PFR28_00604 0.25 +0.3
642,618 - PFR28_00604 0.25 -0.3
642,618 - PFR28_00604 0.25 -0.4
642,633 + PFR28_00604 0.26 +1.4
642,633 + PFR28_00604 0.26 -0.2
642,633 + PFR28_00604 0.26 -0.0
642,634 - PFR28_00604 0.26 +1.0
642,634 - PFR28_00604 0.26 +0.5
642,634 - PFR28_00604 0.26 +0.4
642,645 + PFR28_00604 0.27 +0.8
642,811 - PFR28_00604 0.39 -0.8
642,891 + PFR28_00604 0.45 -0.1
642,892 - PFR28_00604 0.45 -0.5
642,892 - PFR28_00604 0.45 +0.1
642,942 + PFR28_00604 0.49 +1.8
642,943 - PFR28_00604 0.49 -0.9
643,024 - PFR28_00604 0.55 -0.3
643,183 - PFR28_00604 0.67 -0.6
643,197 + PFR28_00604 0.68 -1.3
643,197 + PFR28_00604 0.68 +0.1
643,197 + PFR28_00604 0.68 -1.0
643,197 + PFR28_00604 0.68 +0.4
643,198 - PFR28_00604 0.68 -0.5
643,198 - PFR28_00604 0.68 -1.3
643,293 + PFR28_00604 0.75 -0.8
643,293 + PFR28_00604 0.75 -0.3
643,294 - PFR28_00604 0.75 -0.4
643,294 - PFR28_00604 0.75 +1.4
643,414 - PFR28_00604 0.84 +1.4
643,422 + PFR28_00604 0.85 -0.1
643,422 + PFR28_00604 0.85 -0.2
643,423 - PFR28_00604 0.85 +1.2
643,423 - PFR28_00604 0.85 +0.4
643,423 - PFR28_00604 0.85 -0.0
643,582 + +0.2
643,582 + +0.2
643,583 - -0.4
643,583 - -0.1
643,583 - +1.4
643,618 + -0.1
643,618 + -1.1
643,618 + -0.6
643,618 + -0.4
643,618 + -1.1
643,619 - -1.3
643,619 - +0.2
643,619 - -0.9
643,619 - +0.5
643,709 - -0.2
643,714 + -0.2
643,729 + -0.6
643,910 + +0.8
643,910 + +0.2
643,910 + -0.3
643,910 + +0.6
643,910 + -1.4
643,910 + -0.0
643,910 + -2.0
643,911 - -1.2
643,911 - -0.6
643,911 - -0.0
643,913 + +0.4
643,913 + -1.2
643,913 + -0.8
643,913 + -0.4
643,913 + -0.1
643,913 + -0.6
643,914 - -0.6
643,914 - -1.0
643,914 - -0.4
643,914 - -0.4
643,914 - -0.6
643,914 - -0.7
643,914 - -1.2
643,914 - -2.2
643,914 - -0.2
643,916 + -1.0
643,916 + -0.2
643,916 + +0.4
643,916 + -1.0
643,952 + +0.3
643,952 + +0.4
643,952 + -0.4
643,952 + +0.5
643,952 + -2.0
643,952 + -0.6
643,952 + -1.0
643,952 + -1.3
643,952 + -0.5
643,952 + +0.5
643,952 + -0.0
643,952 + +1.0
643,952 + -1.3
643,953 - -0.5
643,953 - -1.4
643,953 - +0.3
643,953 - +0.1
643,953 - +0.5
643,953 - -0.4
643,953 - -1.6
643,953 - -1.0
643,953 - -0.8
643,953 - +0.0
643,953 - -0.6
643,953 - -0.9
643,953 - +1.0
644,121 - PFR28_00605 0.14 -0.8
644,121 - PFR28_00605 0.14 -0.4
644,135 + PFR28_00605 0.15 -0.9
644,191 + PFR28_00605 0.17 +0.7
644,191 + PFR28_00605 0.17 +0.5
644,191 + PFR28_00605 0.17 +0.0
644,191 + PFR28_00605 0.17 -0.1
644,191 + PFR28_00605 0.17 -0.0
644,191 + PFR28_00605 0.17 +0.3
644,191 + PFR28_00605 0.17 -2.5
644,192 - PFR28_00605 0.17 +0.0
644,192 - PFR28_00605 0.17 -1.1
644,192 - PFR28_00605 0.17 +0.8
644,192 - PFR28_00605 0.17 -0.0
644,192 - PFR28_00605 0.17 -0.9
644,192 - PFR28_00605 0.17 -0.4
644,192 - PFR28_00605 0.17 -2.2
644,192 - PFR28_00605 0.17 -0.0
644,544 - PFR28_00605 0.35 +0.0
644,561 + PFR28_00605 0.35 -1.5
644,561 + PFR28_00605 0.35 -0.1
644,561 + PFR28_00605 0.35 +0.2
644,561 + PFR28_00605 0.35 -1.0
644,561 + PFR28_00605 0.35 +0.7
644,561 + PFR28_00605 0.35 -0.7
644,562 - PFR28_00605 0.35 -0.3
644,562 - PFR28_00605 0.35 +1.1
644,562 - PFR28_00605 0.35 -0.3

Or see this region's nucleotide sequence