Strain Fitness in Serratia liquefaciens MT49 around IAI46_24830

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24825 and IAI46_24830 are separated by 180 nucleotidesIAI46_24830 and IAI46_24835 overlap by 23 nucleotidesIAI46_24835 and IAI46_24840 are separated by 260 nucleotides IAI46_24825: IAI46_24825 - DNA repair protein RadC, at 5,296,915 to 5,297,598 _24825 IAI46_24830: IAI46_24830 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 5,297,779 to 5,298,996 _24830 IAI46_24835: IAI46_24835 - dUTP diphosphatase, at 5,298,974 to 5,299,432 _24835 IAI46_24840: IAI46_24840 - nucleoid occlusion factor SlmA, at 5,299,693 to 5,300,289 _24840 Position (kb) 5297 5298 5299Strain fitness (log2 ratio) -2 -1 0 1 2at 5296.884 kb on - strandat 5296.960 kb on + strandat 5296.960 kb on + strandat 5296.960 kb on + strandat 5296.960 kb on + strandat 5296.960 kb on + strandat 5296.960 kb on + strandat 5296.961 kb on - strandat 5296.963 kb on - strandat 5296.993 kb on + strand, within IAI46_24825at 5297.056 kb on - strand, within IAI46_24825at 5297.071 kb on - strand, within IAI46_24825at 5297.071 kb on - strand, within IAI46_24825at 5297.071 kb on - strand, within IAI46_24825at 5297.071 kb on - strand, within IAI46_24825at 5297.083 kb on - strand, within IAI46_24825at 5297.098 kb on - strand, within IAI46_24825at 5297.134 kb on + strand, within IAI46_24825at 5297.134 kb on + strand, within IAI46_24825at 5297.135 kb on - strand, within IAI46_24825at 5297.135 kb on - strand, within IAI46_24825at 5297.135 kb on - strand, within IAI46_24825at 5297.154 kb on + strand, within IAI46_24825at 5297.155 kb on - strand, within IAI46_24825at 5297.155 kb on - strand, within IAI46_24825at 5297.155 kb on - strand, within IAI46_24825at 5297.155 kb on - strand, within IAI46_24825at 5297.182 kb on - strand, within IAI46_24825at 5297.209 kb on + strand, within IAI46_24825at 5297.255 kb on + strand, within IAI46_24825at 5297.255 kb on + strand, within IAI46_24825at 5297.256 kb on - strand, within IAI46_24825at 5297.256 kb on - strand, within IAI46_24825at 5297.354 kb on + strand, within IAI46_24825at 5297.355 kb on - strand, within IAI46_24825at 5297.355 kb on - strand, within IAI46_24825at 5297.364 kb on + strand, within IAI46_24825at 5297.417 kb on + strand, within IAI46_24825at 5297.440 kb on + strand, within IAI46_24825at 5297.440 kb on + strand, within IAI46_24825at 5297.460 kb on + strand, within IAI46_24825at 5297.565 kb on + strandat 5297.565 kb on + strandat 5297.566 kb on - strandat 5297.566 kb on - strandat 5297.566 kb on - strandat 5297.585 kb on - strandat 5297.600 kb on - strandat 5297.662 kb on + strandat 5297.694 kb on + strandat 5297.695 kb on - strandat 5297.695 kb on - strandat 5299.430 kb on + strandat 5299.444 kb on + strandat 5299.484 kb on + strandat 5299.527 kb on + strandat 5299.527 kb on + strandat 5299.527 kb on + strandat 5299.533 kb on + strandat 5299.533 kb on + strandat 5299.533 kb on + strandat 5299.534 kb on - strandat 5299.562 kb on - strandat 5299.562 kb on - strandat 5299.571 kb on + strandat 5299.603 kb on + strandat 5299.603 kb on + strandat 5299.604 kb on - strandat 5299.610 kb on + strandat 5299.610 kb on + strandat 5299.610 kb on + strandat 5299.611 kb on - strandat 5299.611 kb on - strandat 5299.611 kb on - strandat 5299.664 kb on - strandat 5299.673 kb on + strandat 5299.684 kb on + strandat 5299.684 kb on + strandat 5299.684 kb on + strandat 5299.711 kb on - strandat 5299.785 kb on + strand, within IAI46_24840at 5299.785 kb on + strand, within IAI46_24840at 5299.786 kb on - strand, within IAI46_24840at 5299.786 kb on - strand, within IAI46_24840at 5299.788 kb on + strand, within IAI46_24840at 5299.789 kb on - strand, within IAI46_24840at 5299.838 kb on - strand, within IAI46_24840at 5299.888 kb on - strand, within IAI46_24840at 5299.901 kb on + strand, within IAI46_24840at 5299.902 kb on - strand, within IAI46_24840at 5299.977 kb on - strand, within IAI46_24840

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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5,296,884 - +0.4
5,296,960 + -0.2
5,296,960 + +1.4
5,296,960 + -1.3
5,296,960 + -0.1
5,296,960 + -0.1
5,296,960 + +0.4
5,296,961 - +0.2
5,296,963 - +0.4
5,296,993 + IAI46_24825 0.11 -0.9
5,297,056 - IAI46_24825 0.21 +0.5
5,297,071 - IAI46_24825 0.23 +0.5
5,297,071 - IAI46_24825 0.23 -0.4
5,297,071 - IAI46_24825 0.23 -0.2
5,297,071 - IAI46_24825 0.23 -1.4
5,297,083 - IAI46_24825 0.25 +0.4
5,297,098 - IAI46_24825 0.27 -0.6
5,297,134 + IAI46_24825 0.32 -0.8
5,297,134 + IAI46_24825 0.32 +0.6
5,297,135 - IAI46_24825 0.32 -0.5
5,297,135 - IAI46_24825 0.32 +0.4
5,297,135 - IAI46_24825 0.32 -0.9
5,297,154 + IAI46_24825 0.35 -0.7
5,297,155 - IAI46_24825 0.35 -0.3
5,297,155 - IAI46_24825 0.35 +0.8
5,297,155 - IAI46_24825 0.35 +0.2
5,297,155 - IAI46_24825 0.35 +0.4
5,297,182 - IAI46_24825 0.39 -0.5
5,297,209 + IAI46_24825 0.43 +1.1
5,297,255 + IAI46_24825 0.50 -0.6
5,297,255 + IAI46_24825 0.50 +0.3
5,297,256 - IAI46_24825 0.50 -0.1
5,297,256 - IAI46_24825 0.50 -0.2
5,297,354 + IAI46_24825 0.64 +0.4
5,297,355 - IAI46_24825 0.64 -0.3
5,297,355 - IAI46_24825 0.64 -0.9
5,297,364 + IAI46_24825 0.66 +1.0
5,297,417 + IAI46_24825 0.73 +0.2
5,297,440 + IAI46_24825 0.77 +1.1
5,297,440 + IAI46_24825 0.77 +1.0
5,297,460 + IAI46_24825 0.80 +1.9
5,297,565 + +1.0
5,297,565 + -0.3
5,297,566 - +0.1
5,297,566 - -0.1
5,297,566 - +0.0
5,297,585 - -0.2
5,297,600 - +0.9
5,297,662 + -0.3
5,297,694 + +0.1
5,297,695 - +0.0
5,297,695 - +0.1
5,299,430 + -0.5
5,299,444 + -0.1
5,299,484 + +0.1
5,299,527 + +0.1
5,299,527 + +0.1
5,299,527 + +0.4
5,299,533 + -0.7
5,299,533 + -0.5
5,299,533 + -0.2
5,299,534 - +0.9
5,299,562 - -0.6
5,299,562 - -0.2
5,299,571 + -0.7
5,299,603 + +1.5
5,299,603 + +0.5
5,299,604 - -0.2
5,299,610 + -0.1
5,299,610 + +0.5
5,299,610 + -0.0
5,299,611 - -0.6
5,299,611 - -1.0
5,299,611 - -0.3
5,299,664 - +0.5
5,299,673 + -0.2
5,299,684 + +0.5
5,299,684 + -0.3
5,299,684 + +1.2
5,299,711 - -0.2
5,299,785 + IAI46_24840 0.15 -0.9
5,299,785 + IAI46_24840 0.15 +1.3
5,299,786 - IAI46_24840 0.16 -2.1
5,299,786 - IAI46_24840 0.16 -0.2
5,299,788 + IAI46_24840 0.16 +0.5
5,299,789 - IAI46_24840 0.16 -0.9
5,299,838 - IAI46_24840 0.24 +0.4
5,299,888 - IAI46_24840 0.33 +0.2
5,299,901 + IAI46_24840 0.35 +0.5
5,299,902 - IAI46_24840 0.35 -0.2
5,299,977 - IAI46_24840 0.48 +0.1

Or see this region's nucleotide sequence