Strain Fitness in Serratia liquefaciens MT49 around IAI46_23510

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23500 and IAI46_23505 are separated by 59 nucleotidesIAI46_23505 and IAI46_23510 are separated by 121 nucleotidesIAI46_23510 and IAI46_23515 are separated by 14 nucleotides IAI46_23500: IAI46_23500 - SlyX family protein, at 5,000,552 to 5,000,779 _23500 IAI46_23505: IAI46_23505 - peptidylprolyl isomerase, at 5,000,839 to 5,001,435 _23505 IAI46_23510: IAI46_23510 - YheV family putative metal-binding protein, at 5,001,557 to 5,001,760 _23510 IAI46_23515: IAI46_23515 - glutathione-regulated potassium-efflux system protein KefB, at 5,001,775 to 5,003,583 _23515 Position (kb) 5001 5002Strain fitness (log2 ratio) -2 -1 0 1at 5000.630 kb on - strand, within IAI46_23500at 5000.780 kb on + strandat 5000.780 kb on + strandat 5000.780 kb on + strandat 5000.781 kb on - strandat 5001.009 kb on + strand, within IAI46_23505at 5001.034 kb on + strand, within IAI46_23505at 5001.035 kb on - strand, within IAI46_23505at 5001.085 kb on + strand, within IAI46_23505at 5001.085 kb on + strand, within IAI46_23505at 5001.183 kb on + strand, within IAI46_23505at 5001.183 kb on + strand, within IAI46_23505at 5001.184 kb on - strand, within IAI46_23505at 5001.335 kb on + strand, within IAI46_23505at 5001.387 kb on + strandat 5001.391 kb on + strandat 5001.391 kb on + strandat 5001.391 kb on + strandat 5001.392 kb on - strandat 5001.398 kb on + strandat 5001.399 kb on - strandat 5001.399 kb on - strandat 5001.399 kb on - strandat 5001.427 kb on + strandat 5001.438 kb on + strandat 5001.445 kb on + strandat 5001.455 kb on + strandat 5001.455 kb on + strandat 5001.455 kb on + strandat 5001.456 kb on - strandat 5001.456 kb on - strandat 5001.456 kb on - strandat 5001.503 kb on - strandat 5001.558 kb on + strandat 5001.697 kb on + strand, within IAI46_23510at 5001.709 kb on + strand, within IAI46_23510at 5001.710 kb on - strand, within IAI46_23510at 5001.776 kb on + strandat 5001.782 kb on + strandat 5001.782 kb on + strandat 5001.927 kb on + strandat 5002.105 kb on - strand, within IAI46_23515at 5002.145 kb on + strand, within IAI46_23515at 5002.167 kb on + strand, within IAI46_23515at 5002.168 kb on - strand, within IAI46_23515at 5002.168 kb on - strand, within IAI46_23515at 5002.241 kb on + strand, within IAI46_23515at 5002.242 kb on - strand, within IAI46_23515at 5002.242 kb on - strand, within IAI46_23515at 5002.244 kb on + strand, within IAI46_23515at 5002.244 kb on + strand, within IAI46_23515at 5002.244 kb on + strand, within IAI46_23515at 5002.245 kb on - strand, within IAI46_23515at 5002.245 kb on - strand, within IAI46_23515at 5002.251 kb on + strand, within IAI46_23515at 5002.251 kb on + strand, within IAI46_23515at 5002.251 kb on + strand, within IAI46_23515at 5002.251 kb on + strand, within IAI46_23515at 5002.251 kb on + strand, within IAI46_23515at 5002.251 kb on + strand, within IAI46_23515at 5002.251 kb on + strand, within IAI46_23515at 5002.251 kb on + strand, within IAI46_23515at 5002.251 kb on + strand, within IAI46_23515at 5002.251 kb on + strand, within IAI46_23515at 5002.252 kb on - strand, within IAI46_23515at 5002.252 kb on - strand, within IAI46_23515at 5002.252 kb on - strand, within IAI46_23515at 5002.252 kb on - strand, within IAI46_23515at 5002.252 kb on - strand, within IAI46_23515at 5002.252 kb on - strand, within IAI46_23515at 5002.252 kb on - strand, within IAI46_23515at 5002.252 kb on - strand, within IAI46_23515at 5002.252 kb on - strand, within IAI46_23515at 5002.253 kb on + strand, within IAI46_23515at 5002.253 kb on + strand, within IAI46_23515at 5002.253 kb on + strand, within IAI46_23515at 5002.253 kb on + strand, within IAI46_23515at 5002.253 kb on + strand, within IAI46_23515at 5002.253 kb on + strand, within IAI46_23515at 5002.253 kb on + strand, within IAI46_23515at 5002.253 kb on + strand, within IAI46_23515at 5002.253 kb on + strand, within IAI46_23515at 5002.254 kb on - strand, within IAI46_23515at 5002.254 kb on - strand, within IAI46_23515at 5002.254 kb on - strand, within IAI46_23515at 5002.254 kb on - strand, within IAI46_23515at 5002.254 kb on - strand, within IAI46_23515at 5002.260 kb on - strand, within IAI46_23515at 5002.306 kb on - strand, within IAI46_23515at 5002.308 kb on + strand, within IAI46_23515at 5002.308 kb on + strand, within IAI46_23515at 5002.308 kb on + strand, within IAI46_23515at 5002.309 kb on - strand, within IAI46_23515at 5002.309 kb on - strand, within IAI46_23515at 5002.309 kb on - strand, within IAI46_23515at 5002.309 kb on - strand, within IAI46_23515at 5002.309 kb on - strand, within IAI46_23515at 5002.309 kb on - strand, within IAI46_23515at 5002.400 kb on + strand, within IAI46_23515at 5002.400 kb on + strand, within IAI46_23515at 5002.401 kb on - strand, within IAI46_23515at 5002.401 kb on - strand, within IAI46_23515at 5002.401 kb on - strand, within IAI46_23515at 5002.434 kb on - strand, within IAI46_23515at 5002.480 kb on - strand, within IAI46_23515at 5002.480 kb on - strand, within IAI46_23515at 5002.598 kb on - strand, within IAI46_23515at 5002.598 kb on - strand, within IAI46_23515at 5002.656 kb on - strand, within IAI46_23515at 5002.656 kb on - strand, within IAI46_23515at 5002.671 kb on + strand, within IAI46_23515at 5002.719 kb on + strand, within IAI46_23515at 5002.720 kb on - strand, within IAI46_23515at 5002.721 kb on + strand, within IAI46_23515at 5002.721 kb on + strand, within IAI46_23515at 5002.721 kb on + strand, within IAI46_23515at 5002.721 kb on + strand, within IAI46_23515at 5002.722 kb on - strand, within IAI46_23515at 5002.722 kb on - strand, within IAI46_23515at 5002.722 kb on - strand, within IAI46_23515at 5002.727 kb on - strand, within IAI46_23515at 5002.727 kb on - strand, within IAI46_23515at 5002.727 kb on - strand, within IAI46_23515

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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5,000,630 - IAI46_23500 0.34 +0.7
5,000,780 + +0.1
5,000,780 + -0.3
5,000,780 + -0.0
5,000,781 - -0.4
5,001,009 + IAI46_23505 0.28 -2.5
5,001,034 + IAI46_23505 0.33 -0.5
5,001,035 - IAI46_23505 0.33 -0.3
5,001,085 + IAI46_23505 0.41 +0.3
5,001,085 + IAI46_23505 0.41 -0.3
5,001,183 + IAI46_23505 0.58 -0.8
5,001,183 + IAI46_23505 0.58 -0.5
5,001,184 - IAI46_23505 0.58 -0.4
5,001,335 + IAI46_23505 0.83 -0.2
5,001,387 + -2.5
5,001,391 + -0.3
5,001,391 + -0.1
5,001,391 + -0.3
5,001,392 - +0.9
5,001,398 + -1.5
5,001,399 - -0.6
5,001,399 - -0.0
5,001,399 - -1.1
5,001,427 + -0.3
5,001,438 + -0.6
5,001,445 + -0.4
5,001,455 + -0.7
5,001,455 + +1.3
5,001,455 + -0.5
5,001,456 - +0.5
5,001,456 - -0.3
5,001,456 - +0.4
5,001,503 - +0.9
5,001,558 + +0.7
5,001,697 + IAI46_23510 0.69 +0.3
5,001,709 + IAI46_23510 0.75 -0.2
5,001,710 - IAI46_23510 0.75 +0.1
5,001,776 + -1.0
5,001,782 + -1.1
5,001,782 + +0.5
5,001,927 + -0.3
5,002,105 - IAI46_23515 0.18 -1.9
5,002,145 + IAI46_23515 0.20 -0.6
5,002,167 + IAI46_23515 0.22 +0.5
5,002,168 - IAI46_23515 0.22 -0.6
5,002,168 - IAI46_23515 0.22 +0.9
5,002,241 + IAI46_23515 0.26 +0.2
5,002,242 - IAI46_23515 0.26 +0.3
5,002,242 - IAI46_23515 0.26 +0.5
5,002,244 + IAI46_23515 0.26 -0.1
5,002,244 + IAI46_23515 0.26 +0.9
5,002,244 + IAI46_23515 0.26 -0.1
5,002,245 - IAI46_23515 0.26 +0.6
5,002,245 - IAI46_23515 0.26 +0.1
5,002,251 + IAI46_23515 0.26 -0.0
5,002,251 + IAI46_23515 0.26 -0.3
5,002,251 + IAI46_23515 0.26 +0.1
5,002,251 + IAI46_23515 0.26 +0.7
5,002,251 + IAI46_23515 0.26 -1.3
5,002,251 + IAI46_23515 0.26 +0.3
5,002,251 + IAI46_23515 0.26 -0.2
5,002,251 + IAI46_23515 0.26 -0.5
5,002,251 + IAI46_23515 0.26 -0.0
5,002,251 + IAI46_23515 0.26 -0.7
5,002,252 - IAI46_23515 0.26 +0.4
5,002,252 - IAI46_23515 0.26 +0.4
5,002,252 - IAI46_23515 0.26 +0.1
5,002,252 - IAI46_23515 0.26 -0.1
5,002,252 - IAI46_23515 0.26 -1.0
5,002,252 - IAI46_23515 0.26 -0.5
5,002,252 - IAI46_23515 0.26 -1.3
5,002,252 - IAI46_23515 0.26 +0.7
5,002,252 - IAI46_23515 0.26 -1.4
5,002,253 + IAI46_23515 0.26 +0.2
5,002,253 + IAI46_23515 0.26 -0.1
5,002,253 + IAI46_23515 0.26 +0.7
5,002,253 + IAI46_23515 0.26 +0.0
5,002,253 + IAI46_23515 0.26 -0.6
5,002,253 + IAI46_23515 0.26 -0.1
5,002,253 + IAI46_23515 0.26 -0.2
5,002,253 + IAI46_23515 0.26 -0.1
5,002,253 + IAI46_23515 0.26 -0.3
5,002,254 - IAI46_23515 0.26 +0.1
5,002,254 - IAI46_23515 0.26 -0.2
5,002,254 - IAI46_23515 0.26 +0.2
5,002,254 - IAI46_23515 0.26 -0.3
5,002,254 - IAI46_23515 0.26 +0.1
5,002,260 - IAI46_23515 0.27 -1.0
5,002,306 - IAI46_23515 0.29 +1.7
5,002,308 + IAI46_23515 0.29 -0.1
5,002,308 + IAI46_23515 0.29 -0.3
5,002,308 + IAI46_23515 0.29 +0.2
5,002,309 - IAI46_23515 0.30 +0.6
5,002,309 - IAI46_23515 0.30 -0.1
5,002,309 - IAI46_23515 0.30 -0.4
5,002,309 - IAI46_23515 0.30 -0.0
5,002,309 - IAI46_23515 0.30 +0.1
5,002,309 - IAI46_23515 0.30 +1.1
5,002,400 + IAI46_23515 0.35 +0.1
5,002,400 + IAI46_23515 0.35 +1.7
5,002,401 - IAI46_23515 0.35 +0.0
5,002,401 - IAI46_23515 0.35 -0.3
5,002,401 - IAI46_23515 0.35 +0.6
5,002,434 - IAI46_23515 0.36 -0.3
5,002,480 - IAI46_23515 0.39 -0.2
5,002,480 - IAI46_23515 0.39 +0.2
5,002,598 - IAI46_23515 0.45 +0.4
5,002,598 - IAI46_23515 0.45 +0.2
5,002,656 - IAI46_23515 0.49 -0.7
5,002,656 - IAI46_23515 0.49 +0.6
5,002,671 + IAI46_23515 0.50 -1.4
5,002,719 + IAI46_23515 0.52 -0.5
5,002,720 - IAI46_23515 0.52 -0.6
5,002,721 + IAI46_23515 0.52 +0.9
5,002,721 + IAI46_23515 0.52 -0.6
5,002,721 + IAI46_23515 0.52 +0.6
5,002,721 + IAI46_23515 0.52 -0.1
5,002,722 - IAI46_23515 0.52 +0.7
5,002,722 - IAI46_23515 0.52 -0.2
5,002,722 - IAI46_23515 0.52 +0.9
5,002,727 - IAI46_23515 0.53 +0.0
5,002,727 - IAI46_23515 0.53 -1.4
5,002,727 - IAI46_23515 0.53 -0.2

Or see this region's nucleotide sequence