Strain Fitness in Serratia liquefaciens MT49 around IAI46_22530

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22525 and IAI46_22530 are separated by 66 nucleotidesIAI46_22530 and IAI46_22535 are separated by 11 nucleotidesIAI46_22535 and IAI46_22540 are separated by 30 nucleotides IAI46_22525: IAI46_22525 - amidohydrolase/deacetylase family metallohydrolase, at 4,793,322 to 4,794,461 _22525 IAI46_22530: IAI46_22530 - DUF4310 family protein, at 4,794,528 to 4,795,178 _22530 IAI46_22535: IAI46_22535 - DUF4311 domain-containing protein, at 4,795,190 to 4,795,966 _22535 IAI46_22540: IAI46_22540 - DUF4312 family protein, at 4,795,997 to 4,796,293 _22540 Position (kb) 4794 4795 4796Strain fitness (log2 ratio) -1 0 1 2at 4793.650 kb on + strand, within IAI46_22525at 4793.650 kb on + strand, within IAI46_22525at 4793.650 kb on + strand, within IAI46_22525at 4793.651 kb on - strand, within IAI46_22525at 4793.654 kb on + strand, within IAI46_22525at 4793.655 kb on - strand, within IAI46_22525at 4793.669 kb on + strand, within IAI46_22525at 4793.670 kb on - strand, within IAI46_22525at 4793.670 kb on - strand, within IAI46_22525at 4793.692 kb on - strand, within IAI46_22525at 4793.764 kb on - strand, within IAI46_22525at 4793.777 kb on + strand, within IAI46_22525at 4793.777 kb on + strand, within IAI46_22525at 4793.830 kb on + strand, within IAI46_22525at 4793.872 kb on - strand, within IAI46_22525at 4793.872 kb on - strand, within IAI46_22525at 4793.904 kb on - strand, within IAI46_22525at 4793.927 kb on + strand, within IAI46_22525at 4793.927 kb on + strand, within IAI46_22525at 4793.927 kb on + strand, within IAI46_22525at 4794.164 kb on + strand, within IAI46_22525at 4794.165 kb on - strand, within IAI46_22525at 4794.166 kb on + strand, within IAI46_22525at 4794.166 kb on + strand, within IAI46_22525at 4794.167 kb on - strand, within IAI46_22525at 4794.259 kb on + strand, within IAI46_22525at 4794.259 kb on + strand, within IAI46_22525at 4794.260 kb on - strand, within IAI46_22525at 4794.278 kb on - strand, within IAI46_22525at 4794.278 kb on - strand, within IAI46_22525at 4794.448 kb on - strandat 4794.448 kb on - strandat 4794.448 kb on - strandat 4794.448 kb on - strandat 4794.450 kb on + strandat 4794.450 kb on + strandat 4794.451 kb on - strandat 4794.451 kb on - strandat 4794.451 kb on - strandat 4794.451 kb on - strandat 4794.451 kb on - strandat 4794.451 kb on - strandat 4794.457 kb on + strandat 4794.457 kb on + strandat 4794.458 kb on - strandat 4794.458 kb on - strandat 4794.458 kb on - strandat 4794.458 kb on - strandat 4794.461 kb on + strandat 4794.461 kb on + strandat 4794.461 kb on + strandat 4794.461 kb on + strandat 4794.462 kb on - strandat 4794.462 kb on - strandat 4794.469 kb on + strandat 4794.470 kb on - strandat 4794.479 kb on - strandat 4794.536 kb on + strandat 4794.536 kb on + strandat 4794.537 kb on - strandat 4794.537 kb on - strandat 4794.540 kb on + strandat 4794.541 kb on - strandat 4794.609 kb on - strand, within IAI46_22530at 4794.610 kb on + strand, within IAI46_22530at 4794.610 kb on + strand, within IAI46_22530at 4794.610 kb on + strand, within IAI46_22530at 4794.610 kb on + strand, within IAI46_22530at 4794.610 kb on + strand, within IAI46_22530at 4794.611 kb on - strand, within IAI46_22530at 4794.612 kb on + strand, within IAI46_22530at 4794.711 kb on - strand, within IAI46_22530at 4794.711 kb on - strand, within IAI46_22530at 4794.843 kb on - strand, within IAI46_22530at 4795.069 kb on + strand, within IAI46_22530at 4795.075 kb on + strand, within IAI46_22530at 4795.076 kb on - strand, within IAI46_22530at 4795.076 kb on - strand, within IAI46_22530at 4795.076 kb on - strand, within IAI46_22530at 4795.076 kb on - strand, within IAI46_22530at 4795.078 kb on + strand, within IAI46_22530at 4795.078 kb on + strand, within IAI46_22530at 4795.078 kb on + strand, within IAI46_22530at 4795.078 kb on + strand, within IAI46_22530at 4795.078 kb on + strand, within IAI46_22530at 4795.078 kb on + strand, within IAI46_22530at 4795.079 kb on - strand, within IAI46_22530at 4795.079 kb on - strand, within IAI46_22530at 4795.079 kb on - strand, within IAI46_22530at 4795.079 kb on - strand, within IAI46_22530at 4795.079 kb on - strand, within IAI46_22530at 4795.079 kb on - strand, within IAI46_22530at 4795.079 kb on - strand, within IAI46_22530at 4795.079 kb on - strand, within IAI46_22530at 4795.079 kb on - strand, within IAI46_22530at 4795.079 kb on - strand, within IAI46_22530at 4795.079 kb on - strand, within IAI46_22530at 4795.079 kb on - strand, within IAI46_22530at 4795.079 kb on - strand, within IAI46_22530at 4795.082 kb on + strand, within IAI46_22530at 4795.082 kb on + strand, within IAI46_22530at 4795.082 kb on + strand, within IAI46_22530at 4795.082 kb on + strand, within IAI46_22530at 4795.082 kb on + strand, within IAI46_22530at 4795.082 kb on + strand, within IAI46_22530at 4795.082 kb on + strand, within IAI46_22530at 4795.082 kb on + strand, within IAI46_22530at 4795.082 kb on + strand, within IAI46_22530at 4795.082 kb on + strand, within IAI46_22530at 4795.082 kb on + strand, within IAI46_22530at 4795.082 kb on + strand, within IAI46_22530at 4795.082 kb on + strand, within IAI46_22530at 4795.082 kb on + strand, within IAI46_22530at 4795.083 kb on - strand, within IAI46_22530at 4795.083 kb on - strand, within IAI46_22530at 4795.083 kb on - strand, within IAI46_22530at 4795.083 kb on - strand, within IAI46_22530at 4795.083 kb on - strand, within IAI46_22530at 4795.083 kb on - strand, within IAI46_22530at 4795.083 kb on - strand, within IAI46_22530at 4795.083 kb on - strand, within IAI46_22530at 4795.083 kb on - strand, within IAI46_22530at 4795.083 kb on - strand, within IAI46_22530at 4795.083 kb on - strand, within IAI46_22530at 4795.083 kb on - strand, within IAI46_22530at 4795.083 kb on - strand, within IAI46_22530at 4795.179 kb on + strandat 4795.191 kb on + strandat 4795.191 kb on + strandat 4795.191 kb on + strandat 4795.192 kb on - strandat 4795.192 kb on - strandat 4795.192 kb on - strandat 4795.195 kb on + strandat 4795.216 kb on + strandat 4795.216 kb on + strandat 4795.216 kb on + strandat 4795.216 kb on + strandat 4795.216 kb on + strandat 4795.366 kb on + strand, within IAI46_22535at 4795.411 kb on + strand, within IAI46_22535at 4795.411 kb on + strand, within IAI46_22535at 4795.508 kb on - strand, within IAI46_22535at 4795.588 kb on + strand, within IAI46_22535at 4795.888 kb on + strand, within IAI46_22535at 4795.888 kb on + strand, within IAI46_22535at 4795.888 kb on + strand, within IAI46_22535at 4795.888 kb on + strand, within IAI46_22535at 4795.889 kb on - strandat 4795.889 kb on - strandat 4795.889 kb on - strandat 4795.889 kb on - strandat 4795.889 kb on - strandat 4795.936 kb on + strandat 4795.937 kb on - strandat 4795.937 kb on - strandat 4795.937 kb on - strandat 4795.937 kb on - strandat 4795.946 kb on - strandat 4795.950 kb on - strandat 4795.970 kb on + strandat 4795.972 kb on + strandat 4795.973 kb on - strandat 4795.990 kb on - strandat 4796.164 kb on + strand, within IAI46_22540at 4796.176 kb on + strand, within IAI46_22540at 4796.177 kb on - strand, within IAI46_22540

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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4,793,650 + IAI46_22525 0.29 +0.3
4,793,650 + IAI46_22525 0.29 +0.3
4,793,650 + IAI46_22525 0.29 +0.6
4,793,651 - IAI46_22525 0.29 +0.5
4,793,654 + IAI46_22525 0.29 +0.5
4,793,655 - IAI46_22525 0.29 +0.3
4,793,669 + IAI46_22525 0.30 -1.5
4,793,670 - IAI46_22525 0.31 +0.8
4,793,670 - IAI46_22525 0.31 -0.1
4,793,692 - IAI46_22525 0.32 +1.0
4,793,764 - IAI46_22525 0.39 +0.7
4,793,777 + IAI46_22525 0.40 +0.4
4,793,777 + IAI46_22525 0.40 +0.2
4,793,830 + IAI46_22525 0.45 +0.4
4,793,872 - IAI46_22525 0.48 +0.6
4,793,872 - IAI46_22525 0.48 +0.2
4,793,904 - IAI46_22525 0.51 -0.2
4,793,927 + IAI46_22525 0.53 -1.0
4,793,927 + IAI46_22525 0.53 -0.0
4,793,927 + IAI46_22525 0.53 +0.3
4,794,164 + IAI46_22525 0.74 +0.2
4,794,165 - IAI46_22525 0.74 +1.5
4,794,166 + IAI46_22525 0.74 -1.0
4,794,166 + IAI46_22525 0.74 -1.2
4,794,167 - IAI46_22525 0.74 +0.6
4,794,259 + IAI46_22525 0.82 -0.6
4,794,259 + IAI46_22525 0.82 +0.0
4,794,260 - IAI46_22525 0.82 +0.7
4,794,278 - IAI46_22525 0.84 +0.5
4,794,278 - IAI46_22525 0.84 +0.9
4,794,448 - +0.3
4,794,448 - -0.4
4,794,448 - +0.4
4,794,448 - -0.2
4,794,450 + +0.3
4,794,450 + -0.7
4,794,451 - +0.4
4,794,451 - -0.6
4,794,451 - +0.9
4,794,451 - +0.3
4,794,451 - +0.2
4,794,451 - -0.4
4,794,457 + -0.1
4,794,457 + -0.8
4,794,458 - +0.1
4,794,458 - +0.5
4,794,458 - -0.7
4,794,458 - +0.3
4,794,461 + +0.4
4,794,461 + +0.2
4,794,461 + +0.1
4,794,461 + -0.7
4,794,462 - +0.6
4,794,462 - +0.3
4,794,469 + +0.1
4,794,470 - +0.3
4,794,479 - +0.2
4,794,536 + -1.1
4,794,536 + -0.3
4,794,537 - -0.5
4,794,537 - +0.6
4,794,540 + -0.5
4,794,541 - +0.1
4,794,609 - IAI46_22530 0.12 -0.2
4,794,610 + IAI46_22530 0.13 +0.2
4,794,610 + IAI46_22530 0.13 +1.9
4,794,610 + IAI46_22530 0.13 -0.3
4,794,610 + IAI46_22530 0.13 +0.0
4,794,610 + IAI46_22530 0.13 +0.1
4,794,611 - IAI46_22530 0.13 -0.9
4,794,612 + IAI46_22530 0.13 -0.7
4,794,711 - IAI46_22530 0.28 +0.5
4,794,711 - IAI46_22530 0.28 +0.4
4,794,843 - IAI46_22530 0.48 +0.6
4,795,069 + IAI46_22530 0.83 -0.2
4,795,075 + IAI46_22530 0.84 +1.2
4,795,076 - IAI46_22530 0.84 +0.3
4,795,076 - IAI46_22530 0.84 -0.1
4,795,076 - IAI46_22530 0.84 +0.0
4,795,076 - IAI46_22530 0.84 -0.6
4,795,078 + IAI46_22530 0.84 +0.6
4,795,078 + IAI46_22530 0.84 +0.7
4,795,078 + IAI46_22530 0.84 +0.2
4,795,078 + IAI46_22530 0.84 -0.5
4,795,078 + IAI46_22530 0.84 +1.0
4,795,078 + IAI46_22530 0.84 -1.6
4,795,079 - IAI46_22530 0.85 -0.8
4,795,079 - IAI46_22530 0.85 +0.5
4,795,079 - IAI46_22530 0.85 +0.3
4,795,079 - IAI46_22530 0.85 +1.2
4,795,079 - IAI46_22530 0.85 +0.0
4,795,079 - IAI46_22530 0.85 +0.0
4,795,079 - IAI46_22530 0.85 -1.0
4,795,079 - IAI46_22530 0.85 +1.4
4,795,079 - IAI46_22530 0.85 +0.5
4,795,079 - IAI46_22530 0.85 -0.4
4,795,079 - IAI46_22530 0.85 +0.9
4,795,079 - IAI46_22530 0.85 +0.3
4,795,079 - IAI46_22530 0.85 +0.4
4,795,082 + IAI46_22530 0.85 +1.0
4,795,082 + IAI46_22530 0.85 +0.4
4,795,082 + IAI46_22530 0.85 +0.7
4,795,082 + IAI46_22530 0.85 +0.2
4,795,082 + IAI46_22530 0.85 -0.2
4,795,082 + IAI46_22530 0.85 +0.0
4,795,082 + IAI46_22530 0.85 -0.1
4,795,082 + IAI46_22530 0.85 -0.0
4,795,082 + IAI46_22530 0.85 -0.4
4,795,082 + IAI46_22530 0.85 +1.1
4,795,082 + IAI46_22530 0.85 +0.5
4,795,082 + IAI46_22530 0.85 -0.8
4,795,082 + IAI46_22530 0.85 +0.6
4,795,082 + IAI46_22530 0.85 -0.6
4,795,083 - IAI46_22530 0.85 +0.1
4,795,083 - IAI46_22530 0.85 +0.9
4,795,083 - IAI46_22530 0.85 -0.1
4,795,083 - IAI46_22530 0.85 +0.7
4,795,083 - IAI46_22530 0.85 -0.4
4,795,083 - IAI46_22530 0.85 +0.4
4,795,083 - IAI46_22530 0.85 -0.0
4,795,083 - IAI46_22530 0.85 -0.5
4,795,083 - IAI46_22530 0.85 +0.2
4,795,083 - IAI46_22530 0.85 -0.5
4,795,083 - IAI46_22530 0.85 -0.3
4,795,083 - IAI46_22530 0.85 +1.0
4,795,083 - IAI46_22530 0.85 +0.6
4,795,179 + +0.2
4,795,191 + -0.1
4,795,191 + +0.7
4,795,191 + +0.3
4,795,192 - -1.4
4,795,192 - +0.0
4,795,192 - -0.0
4,795,195 + +0.4
4,795,216 + +1.6
4,795,216 + -0.7
4,795,216 + -0.4
4,795,216 + +0.7
4,795,216 + -0.6
4,795,366 + IAI46_22535 0.23 +0.4
4,795,411 + IAI46_22535 0.28 -0.0
4,795,411 + IAI46_22535 0.28 -0.8
4,795,508 - IAI46_22535 0.41 +1.2
4,795,588 + IAI46_22535 0.51 -0.5
4,795,888 + IAI46_22535 0.90 +0.1
4,795,888 + IAI46_22535 0.90 +0.5
4,795,888 + IAI46_22535 0.90 +0.5
4,795,888 + IAI46_22535 0.90 -0.5
4,795,889 - +0.4
4,795,889 - +1.1
4,795,889 - -0.3
4,795,889 - +1.3
4,795,889 - +0.5
4,795,936 + +1.8
4,795,937 - +1.6
4,795,937 - +0.1
4,795,937 - -0.2
4,795,937 - +0.8
4,795,946 - +0.7
4,795,950 - +0.2
4,795,970 + +0.1
4,795,972 + +0.8
4,795,973 - -0.2
4,795,990 - -0.4
4,796,164 + IAI46_22540 0.56 +0.2
4,796,176 + IAI46_22540 0.60 +0.3
4,796,177 - IAI46_22540 0.61 +0.6

Or see this region's nucleotide sequence