Strain Fitness in Serratia liquefaciens MT49 around IAI46_22385

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22380 and IAI46_22385 are separated by 231 nucleotidesIAI46_22385 and IAI46_22390 are separated by 195 nucleotides IAI46_22380: IAI46_22380 - cell division protein ZapE, at 4,769,254 to 4,770,381 _22380 IAI46_22385: IAI46_22385 - DUF1043 family protein, at 4,770,613 to 4,771,014 _22385 IAI46_22390: IAI46_22390 - serine endoprotease DegQ, at 4,771,210 to 4,772,580 _22390 Position (kb) 4770 4771 4772Strain fitness (log2 ratio) -3 -2 -1 0 1at 4769.709 kb on - strand, within IAI46_22380at 4769.709 kb on - strand, within IAI46_22380at 4769.777 kb on + strand, within IAI46_22380at 4769.778 kb on - strand, within IAI46_22380at 4769.778 kb on - strand, within IAI46_22380at 4769.853 kb on + strand, within IAI46_22380at 4769.853 kb on + strand, within IAI46_22380at 4769.853 kb on + strand, within IAI46_22380at 4769.875 kb on - strand, within IAI46_22380at 4769.875 kb on - strand, within IAI46_22380at 4770.076 kb on + strand, within IAI46_22380at 4770.076 kb on + strand, within IAI46_22380at 4770.077 kb on - strand, within IAI46_22380at 4770.077 kb on - strand, within IAI46_22380at 4770.111 kb on + strand, within IAI46_22380at 4770.153 kb on + strand, within IAI46_22380at 4770.153 kb on + strand, within IAI46_22380at 4770.153 kb on + strand, within IAI46_22380at 4770.154 kb on - strand, within IAI46_22380at 4770.154 kb on - strand, within IAI46_22380at 4770.154 kb on - strand, within IAI46_22380at 4770.154 kb on - strand, within IAI46_22380at 4770.154 kb on - strand, within IAI46_22380at 4770.154 kb on - strand, within IAI46_22380at 4770.154 kb on - strand, within IAI46_22380at 4770.154 kb on - strand, within IAI46_22380at 4770.155 kb on + strand, within IAI46_22380at 4770.155 kb on + strand, within IAI46_22380at 4770.155 kb on + strand, within IAI46_22380at 4770.155 kb on + strand, within IAI46_22380at 4770.155 kb on + strand, within IAI46_22380at 4770.156 kb on - strand, within IAI46_22380at 4770.156 kb on - strand, within IAI46_22380at 4770.156 kb on - strand, within IAI46_22380at 4770.156 kb on - strand, within IAI46_22380at 4770.156 kb on - strand, within IAI46_22380at 4770.156 kb on - strand, within IAI46_22380at 4770.156 kb on - strand, within IAI46_22380at 4770.156 kb on - strand, within IAI46_22380at 4770.156 kb on - strand, within IAI46_22380at 4770.156 kb on - strand, within IAI46_22380at 4770.156 kb on - strand, within IAI46_22380at 4770.156 kb on - strand, within IAI46_22380at 4770.157 kb on + strand, within IAI46_22380at 4770.157 kb on + strand, within IAI46_22380at 4770.157 kb on + strand, within IAI46_22380at 4770.157 kb on + strand, within IAI46_22380at 4770.157 kb on + strand, within IAI46_22380at 4770.157 kb on + strand, within IAI46_22380at 4770.158 kb on - strand, within IAI46_22380at 4770.158 kb on - strand, within IAI46_22380at 4770.158 kb on - strand, within IAI46_22380at 4770.158 kb on - strand, within IAI46_22380at 4770.158 kb on - strand, within IAI46_22380at 4770.158 kb on - strand, within IAI46_22380at 4770.256 kb on + strand, within IAI46_22380at 4770.275 kb on + strandat 4770.275 kb on + strandat 4770.275 kb on + strandat 4770.276 kb on - strandat 4770.276 kb on - strandat 4770.276 kb on - strandat 4770.276 kb on - strandat 4770.276 kb on - strandat 4770.279 kb on + strandat 4770.279 kb on + strandat 4770.279 kb on + strandat 4770.279 kb on + strandat 4770.279 kb on + strandat 4770.280 kb on - strandat 4770.280 kb on - strandat 4770.327 kb on - strandat 4770.327 kb on - strandat 4770.397 kb on + strandat 4770.415 kb on - strandat 4770.437 kb on - strandat 4770.439 kb on + strandat 4770.458 kb on + strandat 4770.458 kb on + strandat 4770.552 kb on - strandat 4770.553 kb on + strandat 4770.563 kb on + strandat 4770.567 kb on - strandat 4770.602 kb on + strandat 4770.603 kb on - strandat 4770.729 kb on + strand, within IAI46_22385at 4770.832 kb on + strand, within IAI46_22385at 4770.832 kb on + strand, within IAI46_22385at 4770.833 kb on - strand, within IAI46_22385at 4770.840 kb on + strand, within IAI46_22385at 4771.066 kb on - strandat 4771.066 kb on - strandat 4771.066 kb on - strandat 4771.087 kb on + strandat 4771.087 kb on + strandat 4771.137 kb on + strandat 4771.147 kb on + strandat 4771.147 kb on + strandat 4771.148 kb on - strandat 4771.152 kb on + strandat 4771.166 kb on + strandat 4771.166 kb on + strandat 4771.166 kb on + strandat 4771.167 kb on - strandat 4771.175 kb on + strandat 4771.175 kb on + strandat 4771.176 kb on - strandat 4771.202 kb on + strandat 4771.202 kb on + strandat 4771.202 kb on + strandat 4771.202 kb on + strandat 4771.203 kb on - strandat 4771.234 kb on - strandat 4771.251 kb on + strandat 4771.394 kb on + strand, within IAI46_22390at 4771.395 kb on - strand, within IAI46_22390at 4771.519 kb on + strand, within IAI46_22390at 4771.519 kb on + strand, within IAI46_22390at 4771.520 kb on - strand, within IAI46_22390at 4771.520 kb on - strand, within IAI46_22390at 4771.520 kb on - strand, within IAI46_22390at 4771.557 kb on + strand, within IAI46_22390at 4771.568 kb on + strand, within IAI46_22390at 4771.569 kb on - strand, within IAI46_22390at 4771.693 kb on - strand, within IAI46_22390

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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4,769,709 - IAI46_22380 0.40 +0.3
4,769,709 - IAI46_22380 0.40 -0.1
4,769,777 + IAI46_22380 0.46 -1.4
4,769,778 - IAI46_22380 0.46 +0.7
4,769,778 - IAI46_22380 0.46 +0.0
4,769,853 + IAI46_22380 0.53 -0.1
4,769,853 + IAI46_22380 0.53 -0.0
4,769,853 + IAI46_22380 0.53 +1.4
4,769,875 - IAI46_22380 0.55 +0.8
4,769,875 - IAI46_22380 0.55 +0.5
4,770,076 + IAI46_22380 0.73 +0.5
4,770,076 + IAI46_22380 0.73 +0.4
4,770,077 - IAI46_22380 0.73 -0.3
4,770,077 - IAI46_22380 0.73 +1.7
4,770,111 + IAI46_22380 0.76 -0.2
4,770,153 + IAI46_22380 0.80 -0.0
4,770,153 + IAI46_22380 0.80 +0.7
4,770,153 + IAI46_22380 0.80 +0.0
4,770,154 - IAI46_22380 0.80 -0.5
4,770,154 - IAI46_22380 0.80 +0.3
4,770,154 - IAI46_22380 0.80 +0.1
4,770,154 - IAI46_22380 0.80 +0.1
4,770,154 - IAI46_22380 0.80 -0.3
4,770,154 - IAI46_22380 0.80 +0.7
4,770,154 - IAI46_22380 0.80 -0.5
4,770,154 - IAI46_22380 0.80 -0.1
4,770,155 + IAI46_22380 0.80 -0.1
4,770,155 + IAI46_22380 0.80 -0.4
4,770,155 + IAI46_22380 0.80 -0.6
4,770,155 + IAI46_22380 0.80 +0.4
4,770,155 + IAI46_22380 0.80 -2.0
4,770,156 - IAI46_22380 0.80 +1.0
4,770,156 - IAI46_22380 0.80 -0.2
4,770,156 - IAI46_22380 0.80 +0.3
4,770,156 - IAI46_22380 0.80 +0.3
4,770,156 - IAI46_22380 0.80 -0.3
4,770,156 - IAI46_22380 0.80 +0.1
4,770,156 - IAI46_22380 0.80 +0.3
4,770,156 - IAI46_22380 0.80 +0.3
4,770,156 - IAI46_22380 0.80 -0.6
4,770,156 - IAI46_22380 0.80 -0.1
4,770,156 - IAI46_22380 0.80 -0.1
4,770,156 - IAI46_22380 0.80 +0.6
4,770,157 + IAI46_22380 0.80 +0.9
4,770,157 + IAI46_22380 0.80 -0.5
4,770,157 + IAI46_22380 0.80 +0.0
4,770,157 + IAI46_22380 0.80 +0.2
4,770,157 + IAI46_22380 0.80 -1.0
4,770,157 + IAI46_22380 0.80 +0.1
4,770,158 - IAI46_22380 0.80 +0.7
4,770,158 - IAI46_22380 0.80 +0.8
4,770,158 - IAI46_22380 0.80 +0.3
4,770,158 - IAI46_22380 0.80 +0.1
4,770,158 - IAI46_22380 0.80 -0.2
4,770,158 - IAI46_22380 0.80 +0.2
4,770,256 + IAI46_22380 0.89 +1.3
4,770,275 + +1.6
4,770,275 + -0.1
4,770,275 + +0.5
4,770,276 - +0.0
4,770,276 - -0.1
4,770,276 - -0.0
4,770,276 - -0.3
4,770,276 - -0.2
4,770,279 + -1.0
4,770,279 + -0.3
4,770,279 + -0.5
4,770,279 + +0.1
4,770,279 + +1.2
4,770,280 - -0.7
4,770,280 - +1.2
4,770,327 - +0.1
4,770,327 - +0.6
4,770,397 + +0.1
4,770,415 - +0.6
4,770,437 - +0.3
4,770,439 + -1.3
4,770,458 + -0.4
4,770,458 + +0.2
4,770,552 - +0.6
4,770,553 + -0.1
4,770,563 + +0.8
4,770,567 - +0.3
4,770,602 + +1.3
4,770,603 - -0.6
4,770,729 + IAI46_22385 0.29 +0.0
4,770,832 + IAI46_22385 0.54 +0.3
4,770,832 + IAI46_22385 0.54 +1.1
4,770,833 - IAI46_22385 0.55 +0.1
4,770,840 + IAI46_22385 0.56 -0.7
4,771,066 - -0.1
4,771,066 - +0.5
4,771,066 - -0.1
4,771,087 + +0.7
4,771,087 + -0.6
4,771,137 + +0.5
4,771,147 + +0.5
4,771,147 + +0.6
4,771,148 - +0.3
4,771,152 + +0.4
4,771,166 + -0.2
4,771,166 + +0.5
4,771,166 + +0.1
4,771,167 - -0.6
4,771,175 + -0.3
4,771,175 + -0.3
4,771,176 - +1.1
4,771,202 + +0.2
4,771,202 + +0.5
4,771,202 + +0.5
4,771,202 + -0.3
4,771,203 - +1.7
4,771,234 - +1.1
4,771,251 + +0.6
4,771,394 + IAI46_22390 0.13 +0.9
4,771,395 - IAI46_22390 0.13 +0.7
4,771,519 + IAI46_22390 0.23 +0.9
4,771,519 + IAI46_22390 0.23 +0.4
4,771,520 - IAI46_22390 0.23 +0.6
4,771,520 - IAI46_22390 0.23 +0.3
4,771,520 - IAI46_22390 0.23 +0.7
4,771,557 + IAI46_22390 0.25 +0.1
4,771,568 + IAI46_22390 0.26 -2.8
4,771,569 - IAI46_22390 0.26 +0.1
4,771,693 - IAI46_22390 0.35 -0.3

Or see this region's nucleotide sequence