Strain Fitness in Serratia liquefaciens MT49 around IAI46_22365

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22355 and IAI46_22360 are separated by 66 nucleotidesIAI46_22360 and IAI46_22365 are separated by 5 nucleotidesIAI46_22365 and IAI46_22370 are separated by 337 nucleotidesIAI46_22370 and IAI46_22375 are separated by 15 nucleotides IAI46_22355: IAI46_22355 - hypothetical protein, at 4,766,115 to 4,766,594 _22355 IAI46_22360: IAI46_22360 - ClpXP protease specificity-enhancing factor, at 4,766,661 to 4,767,158 _22360 IAI46_22365: IAI46_22365 - stringent starvation protein A, at 4,767,164 to 4,767,805 _22365 IAI46_22370: IAI46_22370 - 30S ribosomal protein S9, at 4,768,143 to 4,768,535 _22370 IAI46_22375: IAI46_22375 - 50S ribosomal protein L13, at 4,768,551 to 4,768,979 _22375 Position (kb) 4767 4768Strain fitness (log2 ratio) -2 -1 0 1 2at 4766.205 kb on + strand, within IAI46_22355at 4766.205 kb on + strand, within IAI46_22355at 4766.207 kb on + strand, within IAI46_22355at 4766.207 kb on + strand, within IAI46_22355at 4766.207 kb on + strand, within IAI46_22355at 4766.208 kb on - strand, within IAI46_22355at 4766.208 kb on - strand, within IAI46_22355at 4766.208 kb on - strand, within IAI46_22355at 4766.208 kb on - strand, within IAI46_22355at 4766.208 kb on - strand, within IAI46_22355at 4766.303 kb on + strand, within IAI46_22355at 4766.394 kb on + strand, within IAI46_22355at 4766.394 kb on + strand, within IAI46_22355at 4766.394 kb on + strand, within IAI46_22355at 4766.395 kb on - strand, within IAI46_22355at 4766.395 kb on - strand, within IAI46_22355at 4766.395 kb on - strand, within IAI46_22355at 4766.397 kb on - strand, within IAI46_22355at 4766.435 kb on + strand, within IAI46_22355at 4766.436 kb on - strand, within IAI46_22355at 4766.436 kb on - strand, within IAI46_22355at 4766.441 kb on - strand, within IAI46_22355at 4766.441 kb on - strand, within IAI46_22355at 4766.453 kb on + strand, within IAI46_22355at 4766.453 kb on + strand, within IAI46_22355at 4766.454 kb on - strand, within IAI46_22355at 4766.454 kb on - strand, within IAI46_22355at 4766.460 kb on - strand, within IAI46_22355at 4766.486 kb on + strand, within IAI46_22355at 4766.487 kb on - strand, within IAI46_22355at 4766.573 kb on + strandat 4766.574 kb on - strandat 4766.662 kb on + strandat 4766.729 kb on + strand, within IAI46_22360at 4766.830 kb on + strand, within IAI46_22360at 4766.878 kb on + strand, within IAI46_22360at 4766.878 kb on + strand, within IAI46_22360at 4766.879 kb on - strand, within IAI46_22360at 4766.879 kb on - strand, within IAI46_22360at 4767.063 kb on + strand, within IAI46_22360at 4767.063 kb on + strand, within IAI46_22360at 4767.064 kb on - strand, within IAI46_22360at 4767.064 kb on - strand, within IAI46_22360at 4767.081 kb on + strand, within IAI46_22360at 4767.106 kb on + strand, within IAI46_22360at 4767.106 kb on + strand, within IAI46_22360at 4767.106 kb on + strand, within IAI46_22360at 4767.107 kb on - strand, within IAI46_22360at 4767.124 kb on + strandat 4767.125 kb on - strandat 4767.152 kb on + strandat 4767.153 kb on - strandat 4767.153 kb on - strandat 4767.153 kb on - strandat 4767.166 kb on - strandat 4767.166 kb on - strandat 4767.166 kb on - strandat 4767.250 kb on - strand, within IAI46_22365at 4767.250 kb on - strand, within IAI46_22365at 4767.250 kb on - strand, within IAI46_22365at 4767.250 kb on - strand, within IAI46_22365at 4767.250 kb on - strand, within IAI46_22365at 4767.250 kb on - strand, within IAI46_22365at 4767.293 kb on + strand, within IAI46_22365at 4767.294 kb on - strand, within IAI46_22365at 4767.363 kb on + strand, within IAI46_22365at 4767.363 kb on + strand, within IAI46_22365at 4767.463 kb on - strand, within IAI46_22365at 4767.574 kb on - strand, within IAI46_22365at 4767.587 kb on - strand, within IAI46_22365at 4767.597 kb on + strand, within IAI46_22365at 4767.598 kb on - strand, within IAI46_22365at 4767.598 kb on - strand, within IAI46_22365at 4767.625 kb on + strand, within IAI46_22365at 4767.722 kb on + strand, within IAI46_22365at 4767.722 kb on + strand, within IAI46_22365at 4767.727 kb on + strand, within IAI46_22365at 4767.727 kb on + strand, within IAI46_22365at 4767.728 kb on - strand, within IAI46_22365at 4767.728 kb on - strand, within IAI46_22365at 4767.728 kb on - strand, within IAI46_22365at 4767.728 kb on - strand, within IAI46_22365at 4767.732 kb on - strand, within IAI46_22365at 4767.732 kb on - strand, within IAI46_22365at 4767.732 kb on - strand, within IAI46_22365at 4767.821 kb on - strandat 4767.840 kb on + strandat 4767.860 kb on - strandat 4767.860 kb on - strandat 4767.906 kb on + strandat 4767.906 kb on + strandat 4767.906 kb on + strandat 4767.906 kb on + strandat 4767.907 kb on - strandat 4767.941 kb on - strandat 4767.978 kb on - strandat 4768.041 kb on - strandat 4768.042 kb on + strandat 4768.058 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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4,766,205 + IAI46_22355 0.19 -1.8
4,766,205 + IAI46_22355 0.19 -0.2
4,766,207 + IAI46_22355 0.19 +0.9
4,766,207 + IAI46_22355 0.19 +0.3
4,766,207 + IAI46_22355 0.19 -0.9
4,766,208 - IAI46_22355 0.19 +0.3
4,766,208 - IAI46_22355 0.19 +0.0
4,766,208 - IAI46_22355 0.19 -1.4
4,766,208 - IAI46_22355 0.19 -0.8
4,766,208 - IAI46_22355 0.19 +0.3
4,766,303 + IAI46_22355 0.39 +0.9
4,766,394 + IAI46_22355 0.58 -0.1
4,766,394 + IAI46_22355 0.58 +0.9
4,766,394 + IAI46_22355 0.58 -0.0
4,766,395 - IAI46_22355 0.58 +0.4
4,766,395 - IAI46_22355 0.58 -0.9
4,766,395 - IAI46_22355 0.58 -0.4
4,766,397 - IAI46_22355 0.59 +0.6
4,766,435 + IAI46_22355 0.67 -0.3
4,766,436 - IAI46_22355 0.67 +0.5
4,766,436 - IAI46_22355 0.67 +1.2
4,766,441 - IAI46_22355 0.68 +0.2
4,766,441 - IAI46_22355 0.68 -0.0
4,766,453 + IAI46_22355 0.70 +0.6
4,766,453 + IAI46_22355 0.70 +0.2
4,766,454 - IAI46_22355 0.71 -0.3
4,766,454 - IAI46_22355 0.71 -0.2
4,766,460 - IAI46_22355 0.72 +0.4
4,766,486 + IAI46_22355 0.77 +0.0
4,766,487 - IAI46_22355 0.78 -0.1
4,766,573 + +0.1
4,766,574 - -0.5
4,766,662 + +0.8
4,766,729 + IAI46_22360 0.14 +0.7
4,766,830 + IAI46_22360 0.34 +0.2
4,766,878 + IAI46_22360 0.44 +0.3
4,766,878 + IAI46_22360 0.44 +0.4
4,766,879 - IAI46_22360 0.44 +0.0
4,766,879 - IAI46_22360 0.44 +0.8
4,767,063 + IAI46_22360 0.81 -0.0
4,767,063 + IAI46_22360 0.81 -0.6
4,767,064 - IAI46_22360 0.81 -0.3
4,767,064 - IAI46_22360 0.81 +0.5
4,767,081 + IAI46_22360 0.84 +0.6
4,767,106 + IAI46_22360 0.89 +0.2
4,767,106 + IAI46_22360 0.89 +0.9
4,767,106 + IAI46_22360 0.89 -0.0
4,767,107 - IAI46_22360 0.90 +0.2
4,767,124 + +0.2
4,767,125 - +0.4
4,767,152 + +0.1
4,767,153 - +0.4
4,767,153 - +0.2
4,767,153 - +0.9
4,767,166 - +0.9
4,767,166 - +0.1
4,767,166 - +0.5
4,767,250 - IAI46_22365 0.13 +0.3
4,767,250 - IAI46_22365 0.13 +0.2
4,767,250 - IAI46_22365 0.13 +1.1
4,767,250 - IAI46_22365 0.13 -0.4
4,767,250 - IAI46_22365 0.13 +0.2
4,767,250 - IAI46_22365 0.13 +0.3
4,767,293 + IAI46_22365 0.20 +1.0
4,767,294 - IAI46_22365 0.20 +1.6
4,767,363 + IAI46_22365 0.31 +2.0
4,767,363 + IAI46_22365 0.31 -0.0
4,767,463 - IAI46_22365 0.47 +0.2
4,767,574 - IAI46_22365 0.64 -0.2
4,767,587 - IAI46_22365 0.66 +1.3
4,767,597 + IAI46_22365 0.67 -0.4
4,767,598 - IAI46_22365 0.68 +0.4
4,767,598 - IAI46_22365 0.68 +0.3
4,767,625 + IAI46_22365 0.72 -0.4
4,767,722 + IAI46_22365 0.87 +1.3
4,767,722 + IAI46_22365 0.87 +0.4
4,767,727 + IAI46_22365 0.88 -0.5
4,767,727 + IAI46_22365 0.88 +0.9
4,767,728 - IAI46_22365 0.88 +0.3
4,767,728 - IAI46_22365 0.88 +0.1
4,767,728 - IAI46_22365 0.88 +0.6
4,767,728 - IAI46_22365 0.88 +0.1
4,767,732 - IAI46_22365 0.88 +0.2
4,767,732 - IAI46_22365 0.88 +0.7
4,767,732 - IAI46_22365 0.88 +0.7
4,767,821 - +0.6
4,767,840 + -1.0
4,767,860 - +0.6
4,767,860 - +2.0
4,767,906 + -0.3
4,767,906 + +0.4
4,767,906 + +0.6
4,767,906 + +1.3
4,767,907 - -0.2
4,767,941 - +2.5
4,767,978 - +0.6
4,768,041 - +0.1
4,768,042 + +0.4
4,768,058 - +0.8

Or see this region's nucleotide sequence