Strain Fitness in Serratia liquefaciens MT49 around IAI46_21540

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21535 and IAI46_21540 are separated by 533 nucleotides IAI46_21535: IAI46_21535 - helix-turn-helix transcriptional regulator, at 4,567,058 to 4,567,651 _21535 IAI46_21540: IAI46_21540 - type VI secretion system contractile sheath small subunit, at 4,568,185 to 4,568,732 _21540 Position (kb) 4568 4569Strain fitness (log2 ratio) -1 0 1 2at 4567.197 kb on - strand, within IAI46_21535at 4567.260 kb on - strand, within IAI46_21535at 4567.655 kb on - strandat 4567.705 kb on + strandat 4567.764 kb on + strandat 4568.140 kb on + strandat 4568.140 kb on + strandat 4568.141 kb on - strandat 4568.179 kb on + strandat 4568.187 kb on - strandat 4568.362 kb on + strand, within IAI46_21540at 4568.501 kb on + strand, within IAI46_21540at 4568.515 kb on - strand, within IAI46_21540at 4568.648 kb on + strand, within IAI46_21540at 4568.696 kb on + strandat 4568.726 kb on + strandat 4568.807 kb on - strandat 4568.841 kb on + strandat 4568.862 kb on - strandat 4568.871 kb on - strandat 4568.876 kb on + strandat 4568.902 kb on - strandat 4569.281 kb on - strandat 4569.313 kb on + strandat 4569.501 kb on + strandat 4569.508 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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4,567,197 - IAI46_21535 0.23 +1.9
4,567,260 - IAI46_21535 0.34 -0.2
4,567,655 - +1.0
4,567,705 + +1.1
4,567,764 + -0.9
4,568,140 + -0.6
4,568,140 + +1.1
4,568,141 - +0.0
4,568,179 + +0.3
4,568,187 - +1.1
4,568,362 + IAI46_21540 0.32 -0.3
4,568,501 + IAI46_21540 0.58 +0.1
4,568,515 - IAI46_21540 0.60 -0.6
4,568,648 + IAI46_21540 0.84 +0.2
4,568,696 + -0.1
4,568,726 + -1.2
4,568,807 - -0.6
4,568,841 + +0.2
4,568,862 - -0.6
4,568,871 - +0.1
4,568,876 + +0.0
4,568,902 - -0.2
4,569,281 - +0.6
4,569,313 + +0.7
4,569,501 + -0.2
4,569,508 + +0.9

Or see this region's nucleotide sequence