Strain Fitness in Serratia liquefaciens MT49 around IAI46_21420

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21410 and IAI46_21415 are separated by 20 nucleotidesIAI46_21415 and IAI46_21420 are separated by 31 nucleotidesIAI46_21420 and IAI46_21425 overlap by 4 nucleotidesIAI46_21425 and IAI46_21430 are separated by 17 nucleotidesIAI46_21430 and IAI46_21435 overlap by 8 nucleotides IAI46_21410: IAI46_21410 - YggS family pyridoxal phosphate-dependent enzyme, at 4,540,060 to 4,540,767 _21410 IAI46_21415: IAI46_21415 - pyrroline-5-carboxylate reductase, at 4,540,788 to 4,541,609 _21415 IAI46_21420: IAI46_21420 - YggT family protein, at 4,541,641 to 4,542,195 _21420 IAI46_21425: IAI46_21425 - YggU family protein, at 4,542,192 to 4,542,482 _21425 IAI46_21430: IAI46_21430 - XTP/dITP diphosphatase, at 4,542,500 to 4,543,093 _21430 IAI46_21435: IAI46_21435 - radical SAM family heme chaperone HemW, at 4,543,086 to 4,544,225 _21435 Position (kb) 4541 4542 4543Strain fitness (log2 ratio) -2 -1 0 1 2at 4540.657 kb on - strand, within IAI46_21410at 4540.753 kb on + strandat 4540.786 kb on + strandat 4540.799 kb on + strandat 4540.805 kb on + strandat 4540.806 kb on - strandat 4540.806 kb on - strandat 4540.904 kb on + strand, within IAI46_21415at 4540.990 kb on + strand, within IAI46_21415at 4541.106 kb on + strand, within IAI46_21415at 4541.133 kb on - strand, within IAI46_21415at 4541.133 kb on - strand, within IAI46_21415at 4541.137 kb on + strand, within IAI46_21415at 4541.137 kb on + strand, within IAI46_21415at 4541.137 kb on + strand, within IAI46_21415at 4541.137 kb on + strand, within IAI46_21415at 4541.138 kb on - strand, within IAI46_21415at 4541.190 kb on + strand, within IAI46_21415at 4541.190 kb on + strand, within IAI46_21415at 4541.226 kb on + strand, within IAI46_21415at 4541.260 kb on + strand, within IAI46_21415at 4541.260 kb on + strand, within IAI46_21415at 4541.260 kb on + strand, within IAI46_21415at 4541.260 kb on + strand, within IAI46_21415at 4541.261 kb on - strand, within IAI46_21415at 4541.261 kb on - strand, within IAI46_21415at 4541.261 kb on - strand, within IAI46_21415at 4541.340 kb on - strand, within IAI46_21415at 4541.370 kb on - strand, within IAI46_21415at 4541.611 kb on + strandat 4541.622 kb on + strandat 4541.622 kb on + strandat 4541.683 kb on + strandat 4541.683 kb on + strandat 4541.693 kb on + strandat 4541.693 kb on + strandat 4541.694 kb on - strandat 4541.737 kb on + strand, within IAI46_21420at 4541.799 kb on + strand, within IAI46_21420at 4541.799 kb on + strand, within IAI46_21420at 4541.802 kb on + strand, within IAI46_21420at 4541.802 kb on + strand, within IAI46_21420at 4541.820 kb on + strand, within IAI46_21420at 4541.919 kb on + strand, within IAI46_21420at 4541.963 kb on - strand, within IAI46_21420at 4542.009 kb on - strand, within IAI46_21420at 4542.009 kb on - strand, within IAI46_21420at 4542.043 kb on + strand, within IAI46_21420at 4542.044 kb on - strand, within IAI46_21420at 4542.052 kb on - strand, within IAI46_21420at 4542.081 kb on + strand, within IAI46_21420at 4542.140 kb on - strandat 4542.151 kb on + strandat 4542.151 kb on + strandat 4542.151 kb on + strandat 4542.152 kb on - strandat 4542.152 kb on - strandat 4542.235 kb on + strand, within IAI46_21425at 4542.235 kb on + strand, within IAI46_21425at 4542.237 kb on + strand, within IAI46_21425at 4542.237 kb on + strand, within IAI46_21425at 4542.237 kb on + strand, within IAI46_21425at 4542.238 kb on - strand, within IAI46_21425at 4542.239 kb on + strand, within IAI46_21425at 4542.239 kb on + strand, within IAI46_21425at 4542.239 kb on + strand, within IAI46_21425at 4542.239 kb on + strand, within IAI46_21425at 4542.239 kb on + strand, within IAI46_21425at 4542.239 kb on + strand, within IAI46_21425at 4542.240 kb on - strand, within IAI46_21425at 4542.294 kb on - strand, within IAI46_21425at 4542.394 kb on + strand, within IAI46_21425at 4542.395 kb on - strand, within IAI46_21425at 4542.427 kb on + strand, within IAI46_21425at 4542.427 kb on + strand, within IAI46_21425at 4542.428 kb on - strand, within IAI46_21425at 4542.437 kb on + strand, within IAI46_21425at 4542.438 kb on - strand, within IAI46_21425at 4542.438 kb on - strand, within IAI46_21425at 4542.438 kb on - strand, within IAI46_21425at 4542.492 kb on + strandat 4542.493 kb on - strandat 4542.749 kb on + strand, within IAI46_21430at 4542.749 kb on + strand, within IAI46_21430at 4542.771 kb on + strand, within IAI46_21430at 4542.869 kb on + strand, within IAI46_21430at 4542.869 kb on + strand, within IAI46_21430at 4542.869 kb on + strand, within IAI46_21430at 4542.869 kb on + strand, within IAI46_21430at 4542.869 kb on + strand, within IAI46_21430at 4542.869 kb on + strand, within IAI46_21430at 4542.869 kb on + strand, within IAI46_21430at 4542.870 kb on - strand, within IAI46_21430at 4542.870 kb on - strand, within IAI46_21430at 4542.871 kb on + strand, within IAI46_21430at 4542.871 kb on + strand, within IAI46_21430at 4542.974 kb on - strand, within IAI46_21430at 4542.980 kb on + strand, within IAI46_21430at 4542.980 kb on + strand, within IAI46_21430at 4542.981 kb on - strand, within IAI46_21430at 4542.981 kb on - strand, within IAI46_21430at 4543.091 kb on + strandat 4543.091 kb on + strandat 4543.113 kb on + strandat 4543.121 kb on + strandat 4543.121 kb on + strandat 4543.122 kb on - strandat 4543.122 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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4,540,657 - IAI46_21410 0.84 +0.1
4,540,753 + -0.3
4,540,786 + +0.8
4,540,799 + -1.6
4,540,805 + -0.1
4,540,806 - -0.2
4,540,806 - -0.5
4,540,904 + IAI46_21415 0.14 -0.3
4,540,990 + IAI46_21415 0.25 -2.3
4,541,106 + IAI46_21415 0.39 -2.1
4,541,133 - IAI46_21415 0.42 -0.9
4,541,133 - IAI46_21415 0.42 -0.1
4,541,137 + IAI46_21415 0.42 +0.8
4,541,137 + IAI46_21415 0.42 -0.5
4,541,137 + IAI46_21415 0.42 -2.0
4,541,137 + IAI46_21415 0.42 -2.0
4,541,138 - IAI46_21415 0.43 -2.2
4,541,190 + IAI46_21415 0.49 +0.3
4,541,190 + IAI46_21415 0.49 -0.3
4,541,226 + IAI46_21415 0.53 -0.1
4,541,260 + IAI46_21415 0.57 +0.2
4,541,260 + IAI46_21415 0.57 -0.5
4,541,260 + IAI46_21415 0.57 -0.2
4,541,260 + IAI46_21415 0.57 -0.6
4,541,261 - IAI46_21415 0.58 +0.9
4,541,261 - IAI46_21415 0.58 -0.2
4,541,261 - IAI46_21415 0.58 +0.6
4,541,340 - IAI46_21415 0.67 -1.7
4,541,370 - IAI46_21415 0.71 -0.5
4,541,611 + +0.6
4,541,622 + +0.9
4,541,622 + -1.0
4,541,683 + -0.5
4,541,683 + -2.0
4,541,693 + -0.7
4,541,693 + +0.5
4,541,694 - -0.1
4,541,737 + IAI46_21420 0.17 +0.1
4,541,799 + IAI46_21420 0.28 -0.4
4,541,799 + IAI46_21420 0.28 -0.1
4,541,802 + IAI46_21420 0.29 +1.1
4,541,802 + IAI46_21420 0.29 +0.6
4,541,820 + IAI46_21420 0.32 +0.3
4,541,919 + IAI46_21420 0.50 +0.2
4,541,963 - IAI46_21420 0.58 +0.7
4,542,009 - IAI46_21420 0.66 +0.3
4,542,009 - IAI46_21420 0.66 -0.2
4,542,043 + IAI46_21420 0.72 +1.6
4,542,044 - IAI46_21420 0.73 +1.1
4,542,052 - IAI46_21420 0.74 +0.7
4,542,081 + IAI46_21420 0.79 +0.0
4,542,140 - -0.4
4,542,151 + -0.0
4,542,151 + -0.2
4,542,151 + -1.2
4,542,152 - -0.0
4,542,152 - -0.7
4,542,235 + IAI46_21425 0.15 -0.3
4,542,235 + IAI46_21425 0.15 +0.8
4,542,237 + IAI46_21425 0.15 -0.5
4,542,237 + IAI46_21425 0.15 +0.4
4,542,237 + IAI46_21425 0.15 +1.0
4,542,238 - IAI46_21425 0.16 -0.2
4,542,239 + IAI46_21425 0.16 +2.5
4,542,239 + IAI46_21425 0.16 +0.1
4,542,239 + IAI46_21425 0.16 +0.8
4,542,239 + IAI46_21425 0.16 +0.1
4,542,239 + IAI46_21425 0.16 -1.3
4,542,239 + IAI46_21425 0.16 +0.5
4,542,240 - IAI46_21425 0.16 +0.6
4,542,294 - IAI46_21425 0.35 +0.1
4,542,394 + IAI46_21425 0.69 +1.5
4,542,395 - IAI46_21425 0.70 +0.4
4,542,427 + IAI46_21425 0.81 -0.2
4,542,427 + IAI46_21425 0.81 -0.9
4,542,428 - IAI46_21425 0.81 +0.2
4,542,437 + IAI46_21425 0.84 -0.2
4,542,438 - IAI46_21425 0.85 -0.3
4,542,438 - IAI46_21425 0.85 -0.1
4,542,438 - IAI46_21425 0.85 +0.4
4,542,492 + +1.5
4,542,493 - +0.8
4,542,749 + IAI46_21430 0.42 +1.0
4,542,749 + IAI46_21430 0.42 +0.6
4,542,771 + IAI46_21430 0.46 -0.1
4,542,869 + IAI46_21430 0.62 +0.1
4,542,869 + IAI46_21430 0.62 +1.0
4,542,869 + IAI46_21430 0.62 -1.9
4,542,869 + IAI46_21430 0.62 -0.1
4,542,869 + IAI46_21430 0.62 -0.5
4,542,869 + IAI46_21430 0.62 +0.5
4,542,869 + IAI46_21430 0.62 -0.6
4,542,870 - IAI46_21430 0.62 +1.0
4,542,870 - IAI46_21430 0.62 -0.6
4,542,871 + IAI46_21430 0.62 -0.8
4,542,871 + IAI46_21430 0.62 -0.9
4,542,974 - IAI46_21430 0.80 +0.0
4,542,980 + IAI46_21430 0.81 -0.4
4,542,980 + IAI46_21430 0.81 -2.4
4,542,981 - IAI46_21430 0.81 +0.0
4,542,981 - IAI46_21430 0.81 -1.0
4,543,091 + +0.3
4,543,091 + -0.0
4,543,113 + -0.2
4,543,121 + +1.7
4,543,121 + +0.1
4,543,122 - +0.7
4,543,122 - -0.6

Or see this region's nucleotide sequence