Strain Fitness in Serratia liquefaciens MT49 around IAI46_19325

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19320 and IAI46_19325 are separated by 83 nucleotidesIAI46_19325 and IAI46_19330 are separated by 32 nucleotidesIAI46_19330 and IAI46_19335 are separated by 2 nucleotides IAI46_19320: IAI46_19320 - aminopeptidase PepB, at 4,078,676 to 4,079,971 _19320 IAI46_19325: IAI46_19325 - Fe-S cluster assembly protein IscX, at 4,080,055 to 4,080,255 _19325 IAI46_19330: IAI46_19330 - ISC system 2Fe-2S type ferredoxin, at 4,080,288 to 4,080,623 _19330 IAI46_19335: IAI46_19335 - Fe-S protein assembly chaperone HscA, at 4,080,626 to 4,082,476 _19335 Position (kb) 4080 4081Strain fitness (log2 ratio) -2 -1 0 1at 4079.121 kb on - strand, within IAI46_19320at 4079.173 kb on + strand, within IAI46_19320at 4079.238 kb on + strand, within IAI46_19320at 4079.294 kb on - strand, within IAI46_19320at 4079.294 kb on - strand, within IAI46_19320at 4079.335 kb on + strand, within IAI46_19320at 4079.405 kb on + strand, within IAI46_19320at 4079.491 kb on + strand, within IAI46_19320at 4079.499 kb on + strand, within IAI46_19320at 4079.534 kb on - strand, within IAI46_19320at 4079.538 kb on + strand, within IAI46_19320at 4079.624 kb on - strand, within IAI46_19320at 4079.624 kb on - strand, within IAI46_19320at 4079.948 kb on + strandat 4079.972 kb on - strandat 4079.990 kb on + strandat 4079.991 kb on - strandat 4080.002 kb on - strandat 4080.002 kb on - strandat 4080.034 kb on + strandat 4080.053 kb on - strandat 4080.057 kb on - strandat 4080.070 kb on + strandat 4080.097 kb on + strand, within IAI46_19325at 4080.192 kb on + strand, within IAI46_19325at 4080.210 kb on - strand, within IAI46_19325at 4080.210 kb on - strand, within IAI46_19325at 4080.256 kb on + strandat 4080.256 kb on + strandat 4080.259 kb on + strandat 4080.259 kb on + strandat 4080.289 kb on + strandat 4080.314 kb on + strandat 4080.315 kb on - strandat 4080.316 kb on + strandat 4080.519 kb on - strand, within IAI46_19330at 4080.589 kb on - strand, within IAI46_19330at 4080.589 kb on - strand, within IAI46_19330at 4080.627 kb on + strandat 4080.627 kb on + strandat 4080.628 kb on - strandat 4080.628 kb on - strandat 4080.714 kb on - strandat 4080.714 kb on - strandat 4080.714 kb on - strandat 4080.714 kb on - strandat 4080.983 kb on - strand, within IAI46_19335at 4081.110 kb on - strand, within IAI46_19335

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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4,079,121 - IAI46_19320 0.34 +0.4
4,079,173 + IAI46_19320 0.38 +0.5
4,079,238 + IAI46_19320 0.43 +0.1
4,079,294 - IAI46_19320 0.48 -1.5
4,079,294 - IAI46_19320 0.48 -0.1
4,079,335 + IAI46_19320 0.51 +0.2
4,079,405 + IAI46_19320 0.56 -0.3
4,079,491 + IAI46_19320 0.63 -0.3
4,079,499 + IAI46_19320 0.64 +0.1
4,079,534 - IAI46_19320 0.66 -0.1
4,079,538 + IAI46_19320 0.67 +0.8
4,079,624 - IAI46_19320 0.73 +0.7
4,079,624 - IAI46_19320 0.73 -0.6
4,079,948 + +0.2
4,079,972 - +0.1
4,079,990 + +0.0
4,079,991 - -0.2
4,080,002 - -1.1
4,080,002 - -0.0
4,080,034 + +0.3
4,080,053 - +0.5
4,080,057 - +1.0
4,080,070 + +0.1
4,080,097 + IAI46_19325 0.21 +0.5
4,080,192 + IAI46_19325 0.68 +0.3
4,080,210 - IAI46_19325 0.77 +0.9
4,080,210 - IAI46_19325 0.77 +0.1
4,080,256 + +0.6
4,080,256 + -0.9
4,080,259 + +0.5
4,080,259 + +0.9
4,080,289 + +0.4
4,080,314 + +0.6
4,080,315 - -1.9
4,080,316 + -0.6
4,080,519 - IAI46_19330 0.69 -0.1
4,080,589 - IAI46_19330 0.90 -0.4
4,080,589 - IAI46_19330 0.90 +0.1
4,080,627 + +1.1
4,080,627 + +0.0
4,080,628 - -0.2
4,080,628 - -0.1
4,080,714 - -0.4
4,080,714 - -0.6
4,080,714 - +0.9
4,080,714 - +0.1
4,080,983 - IAI46_19335 0.19 +0.8
4,081,110 - IAI46_19335 0.26 -1.0

Or see this region's nucleotide sequence