Strain Fitness in Serratia liquefaciens MT49 around IAI46_18200

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18195 and IAI46_18200 overlap by 4 nucleotidesIAI46_18200 and IAI46_18205 are separated by 10 nucleotidesIAI46_18205 and IAI46_18210 are separated by 397 nucleotides IAI46_18195: IAI46_18195 - sensor histidine kinase, at 3,830,430 to 3,832,139 _18195 IAI46_18200: IAI46_18200 - response regulator transcription factor, at 3,832,136 to 3,832,870 _18200 IAI46_18205: IAI46_18205 - DUF2502 domain-containing protein, at 3,832,881 to 3,833,213 _18205 IAI46_18210: IAI46_18210 - OFA family MFS transporter, at 3,833,611 to 3,834,837 _18210 Position (kb) 3832 3833Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3831.192 kb on + strand, within IAI46_18195at 3831.193 kb on - strand, within IAI46_18195at 3831.385 kb on - strand, within IAI46_18195at 3831.410 kb on + strand, within IAI46_18195at 3831.410 kb on + strand, within IAI46_18195at 3831.411 kb on - strand, within IAI46_18195at 3831.533 kb on + strand, within IAI46_18195at 3831.534 kb on - strand, within IAI46_18195at 3831.614 kb on + strand, within IAI46_18195at 3831.640 kb on - strand, within IAI46_18195at 3831.642 kb on - strand, within IAI46_18195at 3831.642 kb on - strand, within IAI46_18195at 3831.702 kb on + strand, within IAI46_18195at 3831.703 kb on - strand, within IAI46_18195at 3831.703 kb on - strand, within IAI46_18195at 3831.750 kb on + strand, within IAI46_18195at 3831.751 kb on - strand, within IAI46_18195at 3831.751 kb on - strand, within IAI46_18195at 3831.751 kb on - strand, within IAI46_18195at 3831.751 kb on - strand, within IAI46_18195at 3831.751 kb on - strand, within IAI46_18195at 3831.751 kb on - strand, within IAI46_18195at 3831.757 kb on + strand, within IAI46_18195at 3831.779 kb on + strand, within IAI46_18195at 3832.071 kb on + strandat 3832.187 kb on + strandat 3832.188 kb on - strandat 3832.301 kb on - strand, within IAI46_18200at 3832.366 kb on - strand, within IAI46_18200at 3832.373 kb on - strand, within IAI46_18200at 3832.385 kb on - strand, within IAI46_18200at 3832.427 kb on + strand, within IAI46_18200at 3832.443 kb on - strand, within IAI46_18200at 3832.541 kb on - strand, within IAI46_18200at 3832.553 kb on - strand, within IAI46_18200at 3832.601 kb on + strand, within IAI46_18200at 3832.604 kb on + strand, within IAI46_18200at 3832.604 kb on + strand, within IAI46_18200at 3832.605 kb on - strand, within IAI46_18200at 3832.605 kb on - strand, within IAI46_18200at 3832.730 kb on + strand, within IAI46_18200at 3832.731 kb on - strand, within IAI46_18200at 3832.731 kb on - strand, within IAI46_18200at 3832.777 kb on + strand, within IAI46_18200at 3832.785 kb on - strand, within IAI46_18200at 3832.785 kb on - strand, within IAI46_18200at 3832.868 kb on + strandat 3832.868 kb on + strandat 3832.903 kb on + strandat 3832.906 kb on + strandat 3832.909 kb on + strandat 3832.909 kb on + strandat 3832.910 kb on - strandat 3832.939 kb on + strand, within IAI46_18205at 3832.981 kb on + strand, within IAI46_18205at 3832.982 kb on - strand, within IAI46_18205at 3832.982 kb on - strand, within IAI46_18205at 3833.005 kb on + strand, within IAI46_18205at 3833.005 kb on + strand, within IAI46_18205at 3833.006 kb on - strand, within IAI46_18205at 3833.009 kb on - strand, within IAI46_18205at 3833.009 kb on - strand, within IAI46_18205at 3833.029 kb on + strand, within IAI46_18205at 3833.030 kb on - strand, within IAI46_18205at 3833.194 kb on - strandat 3833.259 kb on + strandat 3833.259 kb on + strandat 3833.259 kb on + strandat 3833.260 kb on - strandat 3833.260 kb on - strandat 3833.260 kb on - strandat 3833.282 kb on + strandat 3833.285 kb on - strandat 3833.302 kb on - strandat 3833.504 kb on + strandat 3833.507 kb on + strandat 3833.507 kb on + strandat 3833.508 kb on - strandat 3833.516 kb on + strandat 3833.516 kb on + strandat 3833.517 kb on - strandat 3833.518 kb on + strandat 3833.518 kb on + strandat 3833.518 kb on + strandat 3833.518 kb on + strandat 3833.518 kb on + strandat 3833.518 kb on + strandat 3833.518 kb on + strandat 3833.518 kb on + strandat 3833.518 kb on + strandat 3833.518 kb on + strandat 3833.519 kb on - strandat 3833.519 kb on - strandat 3833.519 kb on - strandat 3833.519 kb on - strandat 3833.521 kb on + strandat 3833.521 kb on + strandat 3833.521 kb on + strandat 3833.521 kb on + strandat 3833.522 kb on - strandat 3833.522 kb on - strandat 3833.522 kb on - strandat 3833.522 kb on - strandat 3833.522 kb on - strandat 3833.522 kb on - strandat 3833.522 kb on - strandat 3833.587 kb on - strandat 3833.620 kb on - strandat 3833.620 kb on - strandat 3833.620 kb on - strandat 3833.639 kb on + strandat 3833.682 kb on + strandat 3833.683 kb on - strandat 3833.683 kb on - strandat 3833.686 kb on + strandat 3833.686 kb on + strandat 3833.687 kb on - strandat 3833.687 kb on - strandat 3833.687 kb on - strandat 3833.688 kb on + strandat 3833.688 kb on + strandat 3833.862 kb on - strand, within IAI46_18210

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,831,192 + IAI46_18195 0.45 -0.1
3,831,193 - IAI46_18195 0.45 +0.7
3,831,385 - IAI46_18195 0.56 -0.3
3,831,410 + IAI46_18195 0.57 -1.0
3,831,410 + IAI46_18195 0.57 +0.7
3,831,411 - IAI46_18195 0.57 -0.2
3,831,533 + IAI46_18195 0.65 -0.7
3,831,534 - IAI46_18195 0.65 +0.6
3,831,614 + IAI46_18195 0.69 +0.9
3,831,640 - IAI46_18195 0.71 +0.7
3,831,642 - IAI46_18195 0.71 +1.2
3,831,642 - IAI46_18195 0.71 +0.7
3,831,702 + IAI46_18195 0.74 -0.1
3,831,703 - IAI46_18195 0.74 -0.1
3,831,703 - IAI46_18195 0.74 -0.4
3,831,750 + IAI46_18195 0.77 +0.1
3,831,751 - IAI46_18195 0.77 -1.3
3,831,751 - IAI46_18195 0.77 -1.0
3,831,751 - IAI46_18195 0.77 -2.0
3,831,751 - IAI46_18195 0.77 -0.3
3,831,751 - IAI46_18195 0.77 +0.9
3,831,751 - IAI46_18195 0.77 -0.1
3,831,757 + IAI46_18195 0.78 -1.6
3,831,779 + IAI46_18195 0.79 +0.6
3,832,071 + -0.8
3,832,187 + +0.7
3,832,188 - +0.3
3,832,301 - IAI46_18200 0.22 -0.2
3,832,366 - IAI46_18200 0.31 +1.4
3,832,373 - IAI46_18200 0.32 -0.1
3,832,385 - IAI46_18200 0.34 -0.3
3,832,427 + IAI46_18200 0.40 +0.8
3,832,443 - IAI46_18200 0.42 +0.9
3,832,541 - IAI46_18200 0.55 -1.1
3,832,553 - IAI46_18200 0.57 -0.1
3,832,601 + IAI46_18200 0.63 -0.6
3,832,604 + IAI46_18200 0.64 +0.3
3,832,604 + IAI46_18200 0.64 +0.5
3,832,605 - IAI46_18200 0.64 +0.4
3,832,605 - IAI46_18200 0.64 +0.3
3,832,730 + IAI46_18200 0.81 +0.5
3,832,731 - IAI46_18200 0.81 +0.9
3,832,731 - IAI46_18200 0.81 +0.3
3,832,777 + IAI46_18200 0.87 +0.1
3,832,785 - IAI46_18200 0.88 -0.3
3,832,785 - IAI46_18200 0.88 -0.4
3,832,868 + +0.1
3,832,868 + -0.5
3,832,903 + -0.6
3,832,906 + -0.6
3,832,909 + +1.6
3,832,909 + +1.2
3,832,910 - +0.9
3,832,939 + IAI46_18205 0.17 +1.5
3,832,981 + IAI46_18205 0.30 -0.3
3,832,982 - IAI46_18205 0.30 -0.7
3,832,982 - IAI46_18205 0.30 -0.5
3,833,005 + IAI46_18205 0.37 -0.1
3,833,005 + IAI46_18205 0.37 +0.5
3,833,006 - IAI46_18205 0.38 -0.3
3,833,009 - IAI46_18205 0.38 +0.7
3,833,009 - IAI46_18205 0.38 +0.3
3,833,029 + IAI46_18205 0.44 +1.2
3,833,030 - IAI46_18205 0.45 +0.4
3,833,194 - +0.4
3,833,259 + -0.3
3,833,259 + +0.4
3,833,259 + +0.1
3,833,260 - +0.9
3,833,260 - +0.9
3,833,260 - +0.5
3,833,282 + +0.4
3,833,285 - +0.5
3,833,302 - +0.8
3,833,504 + -0.3
3,833,507 + -0.5
3,833,507 + +0.2
3,833,508 - -0.2
3,833,516 + +0.6
3,833,516 + +0.3
3,833,517 - -0.4
3,833,518 + -1.1
3,833,518 + +0.1
3,833,518 + +1.1
3,833,518 + +0.8
3,833,518 + -0.1
3,833,518 + -0.0
3,833,518 + -0.1
3,833,518 + +0.6
3,833,518 + +1.1
3,833,518 + -0.4
3,833,519 - -0.5
3,833,519 - +0.5
3,833,519 - -0.1
3,833,519 - +1.1
3,833,521 + +0.6
3,833,521 + -0.0
3,833,521 + -1.4
3,833,521 + -0.0
3,833,522 - +0.5
3,833,522 - +0.2
3,833,522 - -0.5
3,833,522 - +1.9
3,833,522 - +0.4
3,833,522 - -0.6
3,833,522 - +0.7
3,833,587 - -0.9
3,833,620 - -0.1
3,833,620 - -0.4
3,833,620 - -2.9
3,833,639 + -0.1
3,833,682 + -2.0
3,833,683 - +1.0
3,833,683 - -0.5
3,833,686 + +1.1
3,833,686 + +0.0
3,833,687 - -0.7
3,833,687 - +0.9
3,833,687 - -0.5
3,833,688 + -1.0
3,833,688 + +0.9
3,833,862 - IAI46_18210 0.20 -0.6

Or see this region's nucleotide sequence