Strain Fitness in Serratia liquefaciens MT49 around IAI46_17455

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17445 and IAI46_17450 overlap by 8 nucleotidesIAI46_17450 and IAI46_17455 are separated by 50 nucleotidesIAI46_17455 and IAI46_17460 are separated by 164 nucleotides IAI46_17445: IAI46_17445 - phosphotransferase RcsD, at 3,661,832 to 3,664,534 _17445 IAI46_17450: IAI46_17450 - transcriptional regulator RcsB, at 3,664,527 to 3,665,177 _17450 IAI46_17455: IAI46_17455 - two-component system sensor histidine kinase RcsC, at 3,665,228 to 3,668,098 _17455 IAI46_17460: IAI46_17460 - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 3,668,263 to 3,670,914 _17460 Position (kb) 3665 3666 3667 3668 3669Strain fitness (log2 ratio) -2 -1 0 1 2at 3664.266 kb on - strandat 3664.389 kb on + strandat 3664.468 kb on + strandat 3664.516 kb on + strandat 3664.517 kb on - strandat 3664.532 kb on + strandat 3664.543 kb on + strandat 3664.547 kb on + strandat 3664.565 kb on + strandat 3664.566 kb on - strandat 3664.566 kb on - strandat 3664.716 kb on + strand, within IAI46_17450at 3664.730 kb on + strand, within IAI46_17450at 3664.743 kb on + strand, within IAI46_17450at 3664.847 kb on - strand, within IAI46_17450at 3665.136 kb on + strandat 3665.175 kb on + strandat 3665.176 kb on - strandat 3665.179 kb on + strandat 3665.180 kb on - strandat 3665.180 kb on - strandat 3665.229 kb on + strandat 3665.230 kb on - strandat 3665.275 kb on - strandat 3665.329 kb on + strandat 3665.347 kb on + strandat 3665.347 kb on + strandat 3665.348 kb on - strandat 3665.439 kb on + strandat 3665.459 kb on - strandat 3665.474 kb on + strandat 3665.501 kb on + strandat 3665.501 kb on + strandat 3665.501 kb on + strandat 3665.557 kb on + strand, within IAI46_17455at 3665.557 kb on + strand, within IAI46_17455at 3665.558 kb on - strand, within IAI46_17455at 3665.610 kb on - strand, within IAI46_17455at 3665.610 kb on - strand, within IAI46_17455at 3665.671 kb on + strand, within IAI46_17455at 3665.754 kb on + strand, within IAI46_17455at 3665.892 kb on - strand, within IAI46_17455at 3665.892 kb on - strand, within IAI46_17455at 3665.892 kb on - strand, within IAI46_17455at 3665.931 kb on + strand, within IAI46_17455at 3665.986 kb on + strand, within IAI46_17455at 3666.031 kb on + strand, within IAI46_17455at 3666.032 kb on - strand, within IAI46_17455at 3666.426 kb on + strand, within IAI46_17455at 3666.629 kb on - strand, within IAI46_17455at 3666.646 kb on + strand, within IAI46_17455at 3666.791 kb on - strand, within IAI46_17455at 3666.826 kb on + strand, within IAI46_17455at 3666.886 kb on + strand, within IAI46_17455at 3666.924 kb on + strand, within IAI46_17455at 3666.925 kb on - strand, within IAI46_17455at 3666.925 kb on - strand, within IAI46_17455at 3666.952 kb on + strand, within IAI46_17455at 3666.980 kb on - strand, within IAI46_17455at 3667.246 kb on - strand, within IAI46_17455at 3667.257 kb on + strand, within IAI46_17455at 3667.258 kb on - strand, within IAI46_17455at 3667.267 kb on - strand, within IAI46_17455at 3667.406 kb on + strand, within IAI46_17455at 3667.406 kb on + strand, within IAI46_17455at 3667.407 kb on - strand, within IAI46_17455at 3667.407 kb on - strand, within IAI46_17455at 3667.407 kb on - strand, within IAI46_17455at 3667.466 kb on + strand, within IAI46_17455at 3667.467 kb on - strand, within IAI46_17455at 3667.470 kb on + strand, within IAI46_17455at 3667.471 kb on - strand, within IAI46_17455at 3667.471 kb on - strand, within IAI46_17455at 3667.471 kb on - strand, within IAI46_17455at 3667.477 kb on - strand, within IAI46_17455at 3667.516 kb on - strand, within IAI46_17455at 3667.516 kb on - strand, within IAI46_17455at 3667.532 kb on - strand, within IAI46_17455at 3667.558 kb on + strand, within IAI46_17455at 3667.559 kb on - strand, within IAI46_17455at 3667.559 kb on - strand, within IAI46_17455at 3667.677 kb on + strand, within IAI46_17455at 3667.678 kb on - strand, within IAI46_17455at 3667.744 kb on - strand, within IAI46_17455at 3667.744 kb on - strand, within IAI46_17455at 3667.751 kb on - strand, within IAI46_17455at 3667.753 kb on + strand, within IAI46_17455at 3667.754 kb on - strand, within IAI46_17455at 3667.944 kb on + strandat 3667.944 kb on + strandat 3667.981 kb on + strandat 3667.992 kb on + strandat 3667.992 kb on + strandat 3668.176 kb on + strandat 3668.177 kb on - strandat 3668.183 kb on + strandat 3668.183 kb on + strandat 3668.183 kb on + strandat 3668.201 kb on + strandat 3668.202 kb on - strandat 3668.223 kb on - strandat 3668.238 kb on - strandat 3668.257 kb on + strandat 3668.342 kb on - strandat 3668.368 kb on - strandat 3668.387 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,664,266 - -0.5
3,664,389 + +0.1
3,664,468 + +0.3
3,664,516 + +2.0
3,664,517 - -0.1
3,664,532 + -0.6
3,664,543 + -1.7
3,664,547 + -0.3
3,664,565 + +0.3
3,664,566 - -0.7
3,664,566 - -0.2
3,664,716 + IAI46_17450 0.29 -0.4
3,664,730 + IAI46_17450 0.31 -0.7
3,664,743 + IAI46_17450 0.33 -0.4
3,664,847 - IAI46_17450 0.49 -0.6
3,665,136 + -0.7
3,665,175 + -0.0
3,665,176 - -0.8
3,665,179 + +0.3
3,665,180 - -0.1
3,665,180 - -0.6
3,665,229 + +0.3
3,665,230 - -0.4
3,665,275 - +0.4
3,665,329 + +1.3
3,665,347 + +0.5
3,665,347 + -1.0
3,665,348 - -0.1
3,665,439 + +0.2
3,665,459 - +0.6
3,665,474 + +0.7
3,665,501 + +0.3
3,665,501 + +0.6
3,665,501 + -1.3
3,665,557 + IAI46_17455 0.11 +1.3
3,665,557 + IAI46_17455 0.11 +0.9
3,665,558 - IAI46_17455 0.11 +0.9
3,665,610 - IAI46_17455 0.13 +0.6
3,665,610 - IAI46_17455 0.13 +0.2
3,665,671 + IAI46_17455 0.15 -0.4
3,665,754 + IAI46_17455 0.18 -0.2
3,665,892 - IAI46_17455 0.23 +0.8
3,665,892 - IAI46_17455 0.23 -0.4
3,665,892 - IAI46_17455 0.23 +1.5
3,665,931 + IAI46_17455 0.24 +0.8
3,665,986 + IAI46_17455 0.26 -0.4
3,666,031 + IAI46_17455 0.28 -0.1
3,666,032 - IAI46_17455 0.28 +0.3
3,666,426 + IAI46_17455 0.42 -1.8
3,666,629 - IAI46_17455 0.49 +0.6
3,666,646 + IAI46_17455 0.49 +0.3
3,666,791 - IAI46_17455 0.54 -0.6
3,666,826 + IAI46_17455 0.56 -0.6
3,666,886 + IAI46_17455 0.58 -0.5
3,666,924 + IAI46_17455 0.59 -0.3
3,666,925 - IAI46_17455 0.59 -0.1
3,666,925 - IAI46_17455 0.59 +0.5
3,666,952 + IAI46_17455 0.60 +0.1
3,666,980 - IAI46_17455 0.61 +0.6
3,667,246 - IAI46_17455 0.70 -0.3
3,667,257 + IAI46_17455 0.71 -0.1
3,667,258 - IAI46_17455 0.71 +0.9
3,667,267 - IAI46_17455 0.71 -0.4
3,667,406 + IAI46_17455 0.76 +0.0
3,667,406 + IAI46_17455 0.76 +0.3
3,667,407 - IAI46_17455 0.76 -2.6
3,667,407 - IAI46_17455 0.76 +0.8
3,667,407 - IAI46_17455 0.76 -0.2
3,667,466 + IAI46_17455 0.78 +1.5
3,667,467 - IAI46_17455 0.78 -1.9
3,667,470 + IAI46_17455 0.78 -1.6
3,667,471 - IAI46_17455 0.78 +0.5
3,667,471 - IAI46_17455 0.78 +0.8
3,667,471 - IAI46_17455 0.78 +0.4
3,667,477 - IAI46_17455 0.78 +1.1
3,667,516 - IAI46_17455 0.80 +0.0
3,667,516 - IAI46_17455 0.80 +0.8
3,667,532 - IAI46_17455 0.80 -0.6
3,667,558 + IAI46_17455 0.81 -0.6
3,667,559 - IAI46_17455 0.81 +0.8
3,667,559 - IAI46_17455 0.81 +0.1
3,667,677 + IAI46_17455 0.85 -0.4
3,667,678 - IAI46_17455 0.85 -0.1
3,667,744 - IAI46_17455 0.88 -0.4
3,667,744 - IAI46_17455 0.88 -0.1
3,667,751 - IAI46_17455 0.88 +1.5
3,667,753 + IAI46_17455 0.88 -0.3
3,667,754 - IAI46_17455 0.88 -0.7
3,667,944 + +0.4
3,667,944 + +0.0
3,667,981 + +0.0
3,667,992 + -1.2
3,667,992 + -1.1
3,668,176 + +0.6
3,668,177 - +0.2
3,668,183 + +0.3
3,668,183 + -0.6
3,668,183 + +0.6
3,668,201 + +0.4
3,668,202 - +1.0
3,668,223 - -0.8
3,668,238 - +0.4
3,668,257 + +0.6
3,668,342 - +0.4
3,668,368 - +0.2
3,668,387 - +0.1

Or see this region's nucleotide sequence