Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_17395 and IAI46_17400 are separated by 168 nucleotides IAI46_17400 and IAI46_17405 are separated by 60 nucleotides IAI46_17405 and IAI46_17410 are separated by 79 nucleotides IAI46_17410 and IAI46_17415 are separated by 6 nucleotides
IAI46_17395: IAI46_17395 - PepSY domain-containing protein, at 3,652,662 to 3,654,068
_17395
IAI46_17400: IAI46_17400 - DUF2946 domain-containing protein, at 3,654,237 to 3,654,677
_17400
IAI46_17405: IAI46_17405 - HARLDQ motif MBL-fold protein, at 3,654,738 to 3,655,634
_17405
IAI46_17410: IAI46_17410 - LysR family transcriptional regulator, at 3,655,714 to 3,656,616
_17410
IAI46_17415: IAI46_17415 - nuclear transport factor 2 family protein, at 3,656,623 to 3,657,090
_17415
Position (kb)
3654
3655
3656 Strain fitness (log2 ratio)
-1
0
1
2 at 3653.829 kb on + strand, within IAI46_17395 at 3653.859 kb on - strand, within IAI46_17395 at 3653.860 kb on + strand, within IAI46_17395 at 3653.861 kb on - strand, within IAI46_17395 at 3654.003 kb on - strand at 3654.072 kb on - strand at 3654.072 kb on - strand at 3654.072 kb on - strand at 3654.301 kb on + strand, within IAI46_17400 at 3654.799 kb on + strand at 3654.933 kb on - strand, within IAI46_17405 at 3654.989 kb on - strand, within IAI46_17405 at 3654.989 kb on - strand, within IAI46_17405 at 3654.991 kb on + strand, within IAI46_17405 at 3654.991 kb on + strand, within IAI46_17405 at 3654.992 kb on - strand, within IAI46_17405 at 3655.374 kb on + strand, within IAI46_17405 at 3655.409 kb on + strand, within IAI46_17405 at 3655.410 kb on - strand, within IAI46_17405 at 3655.468 kb on + strand, within IAI46_17405 at 3655.468 kb on + strand, within IAI46_17405 at 3655.469 kb on - strand, within IAI46_17405 at 3655.471 kb on + strand, within IAI46_17405 at 3655.472 kb on - strand, within IAI46_17405 at 3655.472 kb on - strand, within IAI46_17405 at 3655.532 kb on - strand, within IAI46_17405 at 3655.584 kb on - strand at 3655.604 kb on + strand at 3655.604 kb on + strand at 3655.605 kb on - strand at 3655.669 kb on - strand at 3655.670 kb on + strand at 3655.671 kb on - strand at 3655.709 kb on + strand at 3655.709 kb on + strand at 3655.710 kb on - strand at 3655.932 kb on - strand, within IAI46_17410 at 3656.033 kb on + strand, within IAI46_17410 at 3656.139 kb on + strand, within IAI46_17410 at 3656.139 kb on + strand, within IAI46_17410 at 3656.140 kb on - strand, within IAI46_17410 at 3656.140 kb on - strand, within IAI46_17410 at 3656.140 kb on - strand, within IAI46_17410 at 3656.140 kb on - strand, within IAI46_17410 at 3656.140 kb on - strand, within IAI46_17410 at 3656.197 kb on - strand, within IAI46_17410 at 3656.197 kb on - strand, within IAI46_17410 at 3656.246 kb on + strand, within IAI46_17410 at 3656.249 kb on + strand, within IAI46_17410 at 3656.249 kb on + strand, within IAI46_17410 at 3656.249 kb on + strand, within IAI46_17410 at 3656.249 kb on + strand, within IAI46_17410 at 3656.250 kb on - strand, within IAI46_17410 at 3656.299 kb on + strand, within IAI46_17410 at 3656.299 kb on + strand, within IAI46_17410 at 3656.299 kb on + strand, within IAI46_17410 at 3656.300 kb on - strand, within IAI46_17410 at 3656.302 kb on + strand, within IAI46_17410 at 3656.303 kb on - strand, within IAI46_17410 at 3656.303 kb on - strand, within IAI46_17410 at 3656.303 kb on - strand, within IAI46_17410 at 3656.363 kb on + strand, within IAI46_17410 at 3656.415 kb on - strand, within IAI46_17410 at 3656.441 kb on + strand, within IAI46_17410 at 3656.441 kb on + strand, within IAI46_17410 at 3656.488 kb on + strand, within IAI46_17410 at 3656.489 kb on - strand, within IAI46_17410 at 3656.524 kb on + strand, within IAI46_17410 at 3656.524 kb on + strand, within IAI46_17410 at 3656.524 kb on + strand, within IAI46_17410 at 3656.539 kb on + strand at 3656.605 kb on + strand at 3656.606 kb on - strand at 3656.608 kb on + strand at 3656.609 kb on - strand at 3656.620 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 3,653,829 + IAI46_17395 0.83 -0.3 3,653,859 - IAI46_17395 0.85 +0.4 3,653,860 + IAI46_17395 0.85 -0.6 3,653,861 - IAI46_17395 0.85 +1.2 3,654,003 - +1.3 3,654,072 - -0.3 3,654,072 - +0.4 3,654,072 - -0.6 3,654,301 + IAI46_17400 0.15 -0.3 3,654,799 + -0.3 3,654,933 - IAI46_17405 0.22 +0.4 3,654,989 - IAI46_17405 0.28 +0.5 3,654,989 - IAI46_17405 0.28 +0.6 3,654,991 + IAI46_17405 0.28 +1.2 3,654,991 + IAI46_17405 0.28 +0.5 3,654,992 - IAI46_17405 0.28 +0.4 3,655,374 + IAI46_17405 0.71 +0.5 3,655,409 + IAI46_17405 0.75 +0.4 3,655,410 - IAI46_17405 0.75 -0.2 3,655,468 + IAI46_17405 0.81 +2.3 3,655,468 + IAI46_17405 0.81 +0.5 3,655,469 - IAI46_17405 0.81 -0.0 3,655,471 + IAI46_17405 0.82 +0.7 3,655,472 - IAI46_17405 0.82 +0.7 3,655,472 - IAI46_17405 0.82 +0.0 3,655,532 - IAI46_17405 0.89 -0.1 3,655,584 - -0.7 3,655,604 + +0.3 3,655,604 + +0.4 3,655,605 - -0.7 3,655,669 - +0.1 3,655,670 + +1.2 3,655,671 - +1.4 3,655,709 + -0.6 3,655,709 + +0.9 3,655,710 - +0.0 3,655,932 - IAI46_17410 0.24 +1.4 3,656,033 + IAI46_17410 0.35 +0.2 3,656,139 + IAI46_17410 0.47 -0.2 3,656,139 + IAI46_17410 0.47 -1.1 3,656,140 - IAI46_17410 0.47 +0.5 3,656,140 - IAI46_17410 0.47 +1.1 3,656,140 - IAI46_17410 0.47 +0.2 3,656,140 - IAI46_17410 0.47 +0.4 3,656,140 - IAI46_17410 0.47 -0.6 3,656,197 - IAI46_17410 0.53 +0.2 3,656,197 - IAI46_17410 0.53 +0.9 3,656,246 + IAI46_17410 0.59 +1.0 3,656,249 + IAI46_17410 0.59 -0.8 3,656,249 + IAI46_17410 0.59 +0.0 3,656,249 + IAI46_17410 0.59 +0.4 3,656,249 + IAI46_17410 0.59 +0.3 3,656,250 - IAI46_17410 0.59 +0.9 3,656,299 + IAI46_17410 0.65 +1.8 3,656,299 + IAI46_17410 0.65 -0.3 3,656,299 + IAI46_17410 0.65 -0.2 3,656,300 - IAI46_17410 0.65 -1.1 3,656,302 + IAI46_17410 0.65 -0.2 3,656,303 - IAI46_17410 0.65 +0.3 3,656,303 - IAI46_17410 0.65 -0.2 3,656,303 - IAI46_17410 0.65 +1.3 3,656,363 + IAI46_17410 0.72 +1.3 3,656,415 - IAI46_17410 0.78 +1.8 3,656,441 + IAI46_17410 0.81 +1.0 3,656,441 + IAI46_17410 0.81 -0.8 3,656,488 + IAI46_17410 0.86 +1.1 3,656,489 - IAI46_17410 0.86 +0.2 3,656,524 + IAI46_17410 0.90 -1.3 3,656,524 + IAI46_17410 0.90 +1.0 3,656,524 + IAI46_17410 0.90 -0.1 3,656,539 + -0.2 3,656,605 + +0.4 3,656,606 - +1.5 3,656,608 + -0.6 3,656,609 - +1.8 3,656,620 + +0.6
Or see this region's nucleotide sequence