Strain Fitness in Serratia liquefaciens MT49 around IAI46_16725

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16720 and IAI46_16725 are separated by 835 nucleotidesIAI46_16725 and IAI46_16730 are separated by 49 nucleotides IAI46_16720: IAI46_16720 - AMP nucleosidase, at 3,503,327 to 3,504,787 _16720 IAI46_16725: IAI46_16725 - hypothetical protein, at 3,505,623 to 3,506,540 _16725 IAI46_16730: IAI46_16730 - efflux transporter outer membrane subunit, at 3,506,590 to 3,507,993 _16730 Position (kb) 3505 3506 3507Strain fitness (log2 ratio) -2 -1 0 1at 3504.665 kb on + strandat 3504.665 kb on + strandat 3504.761 kb on - strandat 3504.830 kb on + strandat 3504.831 kb on - strandat 3504.831 kb on - strandat 3504.879 kb on - strandat 3504.897 kb on + strandat 3504.898 kb on - strandat 3505.119 kb on + strandat 3505.119 kb on + strandat 3505.505 kb on + strandat 3505.584 kb on + strandat 3505.585 kb on - strandat 3505.622 kb on + strandat 3505.622 kb on + strandat 3505.622 kb on + strandat 3505.622 kb on + strandat 3505.622 kb on + strandat 3505.623 kb on - strandat 3505.623 kb on - strandat 3505.623 kb on - strandat 3505.712 kb on + strandat 3505.713 kb on - strandat 3505.756 kb on - strand, within IAI46_16725at 3505.848 kb on + strand, within IAI46_16725at 3505.849 kb on - strand, within IAI46_16725at 3505.990 kb on - strand, within IAI46_16725at 3506.071 kb on + strand, within IAI46_16725at 3506.253 kb on + strand, within IAI46_16725at 3506.253 kb on + strand, within IAI46_16725at 3506.280 kb on + strand, within IAI46_16725at 3506.281 kb on - strand, within IAI46_16725at 3506.328 kb on + strand, within IAI46_16725at 3506.328 kb on + strand, within IAI46_16725at 3506.329 kb on - strand, within IAI46_16725at 3506.329 kb on - strand, within IAI46_16725at 3506.361 kb on + strand, within IAI46_16725at 3506.362 kb on - strand, within IAI46_16725at 3506.538 kb on + strandat 3506.684 kb on + strandat 3506.718 kb on - strandat 3506.718 kb on - strandat 3506.718 kb on - strandat 3506.863 kb on + strand, within IAI46_16730at 3506.863 kb on + strand, within IAI46_16730at 3506.864 kb on - strand, within IAI46_16730at 3506.950 kb on - strand, within IAI46_16730at 3506.950 kb on - strand, within IAI46_16730at 3506.950 kb on - strand, within IAI46_16730at 3507.103 kb on + strand, within IAI46_16730at 3507.296 kb on + strand, within IAI46_16730at 3507.471 kb on - strand, within IAI46_16730

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,504,665 + +0.2
3,504,665 + -0.5
3,504,761 - +0.7
3,504,830 + +0.8
3,504,831 - +0.3
3,504,831 - +0.2
3,504,879 - +0.2
3,504,897 + -1.2
3,504,898 - +1.0
3,505,119 + -1.1
3,505,119 + +0.4
3,505,505 + +1.0
3,505,584 + +0.5
3,505,585 - -0.1
3,505,622 + +0.3
3,505,622 + +0.4
3,505,622 + +0.5
3,505,622 + +0.1
3,505,622 + -0.2
3,505,623 - +1.2
3,505,623 - -0.7
3,505,623 - +0.0
3,505,712 + +0.2
3,505,713 - +0.0
3,505,756 - IAI46_16725 0.14 -0.2
3,505,848 + IAI46_16725 0.25 -0.7
3,505,849 - IAI46_16725 0.25 +0.1
3,505,990 - IAI46_16725 0.40 -1.1
3,506,071 + IAI46_16725 0.49 +0.4
3,506,253 + IAI46_16725 0.69 +0.3
3,506,253 + IAI46_16725 0.69 -1.0
3,506,280 + IAI46_16725 0.72 +0.9
3,506,281 - IAI46_16725 0.72 +1.1
3,506,328 + IAI46_16725 0.77 -0.5
3,506,328 + IAI46_16725 0.77 +0.0
3,506,329 - IAI46_16725 0.77 +0.1
3,506,329 - IAI46_16725 0.77 +0.1
3,506,361 + IAI46_16725 0.80 +0.4
3,506,362 - IAI46_16725 0.81 +1.3
3,506,538 + +0.6
3,506,684 + +0.9
3,506,718 - -0.3
3,506,718 - +0.2
3,506,718 - +0.1
3,506,863 + IAI46_16730 0.19 +0.4
3,506,863 + IAI46_16730 0.19 -0.3
3,506,864 - IAI46_16730 0.20 -1.0
3,506,950 - IAI46_16730 0.26 -2.0
3,506,950 - IAI46_16730 0.26 +0.7
3,506,950 - IAI46_16730 0.26 +0.4
3,507,103 + IAI46_16730 0.37 -0.6
3,507,296 + IAI46_16730 0.50 +0.3
3,507,471 - IAI46_16730 0.63 -1.3

Or see this region's nucleotide sequence