Strain Fitness in Serratia liquefaciens MT49 around IAI46_16200

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16195 and IAI46_16200 are separated by 106 nucleotidesIAI46_16200 and IAI46_16205 are separated by 5 nucleotidesIAI46_16205 and IAI46_16210 are separated by 114 nucleotides IAI46_16195: IAI46_16195 - LysR family transcriptional regulator, at 3,394,067 to 3,394,984 _16195 IAI46_16200: IAI46_16200 - DMT family transporter, at 3,395,091 to 3,395,546 _16200 IAI46_16205: IAI46_16205 - DMT family transporter, at 3,395,552 to 3,396,016 _16205 IAI46_16210: IAI46_16210 - hypothetical protein, at 3,396,131 to 3,396,727 _16210 Position (kb) 3395 3396Strain fitness (log2 ratio) -1 0 1 2at 3394.155 kb on + strandat 3394.155 kb on + strandat 3394.156 kb on - strandat 3394.179 kb on + strand, within IAI46_16195at 3394.179 kb on + strand, within IAI46_16195at 3394.180 kb on - strand, within IAI46_16195at 3394.180 kb on - strand, within IAI46_16195at 3394.180 kb on - strand, within IAI46_16195at 3394.180 kb on - strand, within IAI46_16195at 3394.180 kb on - strand, within IAI46_16195at 3394.181 kb on + strand, within IAI46_16195at 3394.181 kb on + strand, within IAI46_16195at 3394.181 kb on + strand, within IAI46_16195at 3394.181 kb on + strand, within IAI46_16195at 3394.181 kb on + strand, within IAI46_16195at 3394.181 kb on + strand, within IAI46_16195at 3394.183 kb on + strand, within IAI46_16195at 3394.183 kb on + strand, within IAI46_16195at 3394.183 kb on + strand, within IAI46_16195at 3394.184 kb on - strand, within IAI46_16195at 3394.184 kb on - strand, within IAI46_16195at 3394.329 kb on + strand, within IAI46_16195at 3394.352 kb on + strand, within IAI46_16195at 3394.470 kb on + strand, within IAI46_16195at 3394.470 kb on + strand, within IAI46_16195at 3394.510 kb on + strand, within IAI46_16195at 3394.567 kb on - strand, within IAI46_16195at 3394.610 kb on - strand, within IAI46_16195at 3394.610 kb on - strand, within IAI46_16195at 3394.610 kb on - strand, within IAI46_16195at 3394.610 kb on - strand, within IAI46_16195at 3394.664 kb on - strand, within IAI46_16195at 3394.758 kb on - strand, within IAI46_16195at 3394.788 kb on + strand, within IAI46_16195at 3394.788 kb on + strand, within IAI46_16195at 3394.839 kb on - strand, within IAI46_16195at 3394.839 kb on - strand, within IAI46_16195at 3394.955 kb on + strandat 3395.051 kb on - strandat 3395.052 kb on + strandat 3395.053 kb on - strandat 3395.053 kb on - strandat 3395.140 kb on + strand, within IAI46_16200at 3395.181 kb on + strand, within IAI46_16200at 3395.181 kb on + strand, within IAI46_16200at 3395.182 kb on - strand, within IAI46_16200at 3395.182 kb on - strand, within IAI46_16200at 3395.182 kb on - strand, within IAI46_16200at 3395.182 kb on - strand, within IAI46_16200at 3395.183 kb on + strand, within IAI46_16200at 3395.183 kb on + strand, within IAI46_16200at 3395.219 kb on + strand, within IAI46_16200at 3395.314 kb on - strand, within IAI46_16200at 3395.408 kb on + strand, within IAI46_16200at 3395.409 kb on - strand, within IAI46_16200at 3395.544 kb on + strandat 3395.566 kb on - strandat 3395.668 kb on + strand, within IAI46_16205at 3395.668 kb on + strand, within IAI46_16205at 3395.668 kb on + strand, within IAI46_16205at 3395.797 kb on + strand, within IAI46_16205at 3395.797 kb on + strand, within IAI46_16205at 3395.801 kb on + strand, within IAI46_16205at 3395.801 kb on + strand, within IAI46_16205at 3395.802 kb on - strand, within IAI46_16205at 3395.802 kb on - strand, within IAI46_16205at 3395.802 kb on - strand, within IAI46_16205at 3395.802 kb on - strand, within IAI46_16205at 3395.838 kb on + strand, within IAI46_16205at 3395.846 kb on - strand, within IAI46_16205at 3395.951 kb on + strand, within IAI46_16205at 3395.951 kb on + strand, within IAI46_16205at 3395.951 kb on + strand, within IAI46_16205at 3395.951 kb on + strand, within IAI46_16205at 3395.951 kb on + strand, within IAI46_16205at 3396.036 kb on + strandat 3396.202 kb on + strand, within IAI46_16210at 3396.210 kb on + strand, within IAI46_16210at 3396.248 kb on - strand, within IAI46_16210at 3396.326 kb on + strand, within IAI46_16210at 3396.326 kb on + strand, within IAI46_16210at 3396.327 kb on - strand, within IAI46_16210at 3396.327 kb on - strand, within IAI46_16210at 3396.327 kb on - strand, within IAI46_16210at 3396.327 kb on - strand, within IAI46_16210at 3396.540 kb on + strand, within IAI46_16210at 3396.540 kb on + strand, within IAI46_16210at 3396.541 kb on - strand, within IAI46_16210

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,394,155 + +0.0
3,394,155 + +0.4
3,394,156 - -0.7
3,394,179 + IAI46_16195 0.12 +0.7
3,394,179 + IAI46_16195 0.12 -0.9
3,394,180 - IAI46_16195 0.12 -0.2
3,394,180 - IAI46_16195 0.12 +0.0
3,394,180 - IAI46_16195 0.12 +0.6
3,394,180 - IAI46_16195 0.12 -0.3
3,394,180 - IAI46_16195 0.12 +0.2
3,394,181 + IAI46_16195 0.12 +0.8
3,394,181 + IAI46_16195 0.12 -0.5
3,394,181 + IAI46_16195 0.12 -1.3
3,394,181 + IAI46_16195 0.12 +0.3
3,394,181 + IAI46_16195 0.12 +0.5
3,394,181 + IAI46_16195 0.12 +0.5
3,394,183 + IAI46_16195 0.13 +0.6
3,394,183 + IAI46_16195 0.13 +1.5
3,394,183 + IAI46_16195 0.13 +1.7
3,394,184 - IAI46_16195 0.13 -0.4
3,394,184 - IAI46_16195 0.13 +1.3
3,394,329 + IAI46_16195 0.29 +0.5
3,394,352 + IAI46_16195 0.31 +0.6
3,394,470 + IAI46_16195 0.44 +0.2
3,394,470 + IAI46_16195 0.44 +0.6
3,394,510 + IAI46_16195 0.48 +1.3
3,394,567 - IAI46_16195 0.54 -0.0
3,394,610 - IAI46_16195 0.59 +0.3
3,394,610 - IAI46_16195 0.59 -0.4
3,394,610 - IAI46_16195 0.59 +0.7
3,394,610 - IAI46_16195 0.59 +0.6
3,394,664 - IAI46_16195 0.65 +0.7
3,394,758 - IAI46_16195 0.75 -0.3
3,394,788 + IAI46_16195 0.79 +0.0
3,394,788 + IAI46_16195 0.79 +1.0
3,394,839 - IAI46_16195 0.84 -0.9
3,394,839 - IAI46_16195 0.84 +1.2
3,394,955 + +0.5
3,395,051 - -0.2
3,395,052 + +0.5
3,395,053 - +0.9
3,395,053 - -0.3
3,395,140 + IAI46_16200 0.11 -0.9
3,395,181 + IAI46_16200 0.20 +0.3
3,395,181 + IAI46_16200 0.20 +0.3
3,395,182 - IAI46_16200 0.20 -1.1
3,395,182 - IAI46_16200 0.20 -0.1
3,395,182 - IAI46_16200 0.20 +0.8
3,395,182 - IAI46_16200 0.20 +0.8
3,395,183 + IAI46_16200 0.20 +1.3
3,395,183 + IAI46_16200 0.20 +0.4
3,395,219 + IAI46_16200 0.28 +0.1
3,395,314 - IAI46_16200 0.49 +1.2
3,395,408 + IAI46_16200 0.70 +1.0
3,395,409 - IAI46_16200 0.70 -0.1
3,395,544 + -0.7
3,395,566 - +0.1
3,395,668 + IAI46_16205 0.25 -1.2
3,395,668 + IAI46_16205 0.25 -0.5
3,395,668 + IAI46_16205 0.25 -0.8
3,395,797 + IAI46_16205 0.53 +0.4
3,395,797 + IAI46_16205 0.53 +0.1
3,395,801 + IAI46_16205 0.54 -0.1
3,395,801 + IAI46_16205 0.54 -1.1
3,395,802 - IAI46_16205 0.54 +0.6
3,395,802 - IAI46_16205 0.54 +0.1
3,395,802 - IAI46_16205 0.54 +1.8
3,395,802 - IAI46_16205 0.54 +1.8
3,395,838 + IAI46_16205 0.62 -0.1
3,395,846 - IAI46_16205 0.63 -1.2
3,395,951 + IAI46_16205 0.86 +0.3
3,395,951 + IAI46_16205 0.86 +1.1
3,395,951 + IAI46_16205 0.86 +0.5
3,395,951 + IAI46_16205 0.86 +0.7
3,395,951 + IAI46_16205 0.86 -0.2
3,396,036 + +0.5
3,396,202 + IAI46_16210 0.12 -0.4
3,396,210 + IAI46_16210 0.13 +1.0
3,396,248 - IAI46_16210 0.20 +0.3
3,396,326 + IAI46_16210 0.33 +1.2
3,396,326 + IAI46_16210 0.33 +1.2
3,396,327 - IAI46_16210 0.33 -0.2
3,396,327 - IAI46_16210 0.33 +0.1
3,396,327 - IAI46_16210 0.33 -0.4
3,396,327 - IAI46_16210 0.33 +0.9
3,396,540 + IAI46_16210 0.69 +0.2
3,396,540 + IAI46_16210 0.69 +0.5
3,396,541 - IAI46_16210 0.69 -0.3

Or see this region's nucleotide sequence