Strain Fitness in Serratia liquefaciens MT49 around IAI46_14460

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14455 and IAI46_14460 are separated by 73 nucleotidesIAI46_14460 and IAI46_14465 are separated by 188 nucleotidesIAI46_14465 and IAI46_14470 are separated by 92 nucleotides IAI46_14455: IAI46_14455 - catabolic alanine racemase DadX, at 3,066,050 to 3,067,123 _14455 IAI46_14460: IAI46_14460 - D-amino acid dehydrogenase, at 3,067,197 to 3,068,501 _14460 IAI46_14465: IAI46_14465 - hypothetical protein, at 3,068,690 to 3,068,947 _14465 IAI46_14470: IAI46_14470 - SpoVR family protein, at 3,069,040 to 3,070,575 _14470 Position (kb) 3067 3068 3069Strain fitness (log2 ratio) -2 -1 0 1 2at 3066.321 kb on - strand, within IAI46_14455at 3066.430 kb on + strand, within IAI46_14455at 3066.486 kb on + strand, within IAI46_14455at 3066.486 kb on + strand, within IAI46_14455at 3066.494 kb on + strand, within IAI46_14455at 3066.495 kb on - strand, within IAI46_14455at 3066.495 kb on - strand, within IAI46_14455at 3066.495 kb on - strand, within IAI46_14455at 3066.574 kb on + strand, within IAI46_14455at 3066.575 kb on - strand, within IAI46_14455at 3066.656 kb on + strand, within IAI46_14455at 3066.673 kb on + strand, within IAI46_14455at 3066.680 kb on + strand, within IAI46_14455at 3066.681 kb on - strand, within IAI46_14455at 3066.681 kb on - strand, within IAI46_14455at 3066.928 kb on + strand, within IAI46_14455at 3066.929 kb on - strand, within IAI46_14455at 3066.995 kb on - strand, within IAI46_14455at 3067.009 kb on - strand, within IAI46_14455at 3067.185 kb on + strandat 3067.189 kb on + strandat 3067.190 kb on - strandat 3067.199 kb on - strandat 3067.441 kb on - strand, within IAI46_14460at 3067.486 kb on + strand, within IAI46_14460at 3067.580 kb on + strand, within IAI46_14460at 3067.735 kb on + strand, within IAI46_14460at 3067.843 kb on + strand, within IAI46_14460at 3067.843 kb on + strand, within IAI46_14460at 3067.843 kb on + strand, within IAI46_14460at 3067.843 kb on + strand, within IAI46_14460at 3067.844 kb on - strand, within IAI46_14460at 3067.844 kb on - strand, within IAI46_14460at 3068.114 kb on - strand, within IAI46_14460at 3068.181 kb on - strand, within IAI46_14460at 3068.181 kb on - strand, within IAI46_14460at 3068.200 kb on + strand, within IAI46_14460at 3068.200 kb on + strand, within IAI46_14460at 3068.201 kb on - strand, within IAI46_14460at 3068.450 kb on - strandat 3068.491 kb on - strandat 3068.615 kb on - strandat 3068.646 kb on + strandat 3068.646 kb on + strandat 3068.654 kb on + strandat 3068.657 kb on - strandat 3068.666 kb on + strandat 3068.667 kb on - strandat 3068.688 kb on + strandat 3068.689 kb on - strandat 3068.689 kb on - strandat 3068.689 kb on - strandat 3068.750 kb on - strand, within IAI46_14465at 3068.851 kb on + strand, within IAI46_14465at 3068.994 kb on + strandat 3069.025 kb on - strandat 3069.025 kb on - strandat 3069.045 kb on + strandat 3069.124 kb on + strandat 3069.172 kb on + strandat 3069.195 kb on + strand, within IAI46_14470at 3069.220 kb on + strand, within IAI46_14470at 3069.220 kb on + strand, within IAI46_14470at 3069.244 kb on - strand, within IAI46_14470at 3069.250 kb on - strand, within IAI46_14470at 3069.295 kb on + strand, within IAI46_14470at 3069.441 kb on + strand, within IAI46_14470at 3069.488 kb on - strand, within IAI46_14470

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,066,321 - IAI46_14455 0.25 +0.4
3,066,430 + IAI46_14455 0.35 +0.6
3,066,486 + IAI46_14455 0.41 -0.2
3,066,486 + IAI46_14455 0.41 +1.6
3,066,494 + IAI46_14455 0.41 +1.4
3,066,495 - IAI46_14455 0.41 -0.4
3,066,495 - IAI46_14455 0.41 +1.1
3,066,495 - IAI46_14455 0.41 -0.0
3,066,574 + IAI46_14455 0.49 +0.7
3,066,575 - IAI46_14455 0.49 +0.5
3,066,656 + IAI46_14455 0.56 +0.9
3,066,673 + IAI46_14455 0.58 -0.7
3,066,680 + IAI46_14455 0.59 -0.6
3,066,681 - IAI46_14455 0.59 +0.4
3,066,681 - IAI46_14455 0.59 +1.1
3,066,928 + IAI46_14455 0.82 -1.0
3,066,929 - IAI46_14455 0.82 -0.3
3,066,995 - IAI46_14455 0.88 -0.1
3,067,009 - IAI46_14455 0.89 -1.2
3,067,185 + +1.6
3,067,189 + +0.2
3,067,190 - +0.7
3,067,199 - +0.3
3,067,441 - IAI46_14460 0.19 +0.9
3,067,486 + IAI46_14460 0.22 +1.3
3,067,580 + IAI46_14460 0.29 -0.2
3,067,735 + IAI46_14460 0.41 +0.2
3,067,843 + IAI46_14460 0.50 +0.0
3,067,843 + IAI46_14460 0.50 +0.7
3,067,843 + IAI46_14460 0.50 -1.8
3,067,843 + IAI46_14460 0.50 -1.0
3,067,844 - IAI46_14460 0.50 +1.1
3,067,844 - IAI46_14460 0.50 -0.3
3,068,114 - IAI46_14460 0.70 +0.4
3,068,181 - IAI46_14460 0.75 +0.6
3,068,181 - IAI46_14460 0.75 -0.9
3,068,200 + IAI46_14460 0.77 +0.4
3,068,200 + IAI46_14460 0.77 +1.9
3,068,201 - IAI46_14460 0.77 -0.1
3,068,450 - -0.1
3,068,491 - -0.2
3,068,615 - +1.2
3,068,646 + +1.2
3,068,646 + +0.6
3,068,654 + +1.7
3,068,657 - -0.1
3,068,666 + +1.3
3,068,667 - -0.3
3,068,688 + +0.5
3,068,689 - -0.2
3,068,689 - +0.2
3,068,689 - +0.9
3,068,750 - IAI46_14465 0.23 -0.7
3,068,851 + IAI46_14465 0.62 +0.5
3,068,994 + +0.5
3,069,025 - -0.4
3,069,025 - +1.0
3,069,045 + -1.6
3,069,124 + +0.1
3,069,172 + +0.2
3,069,195 + IAI46_14470 0.10 +0.3
3,069,220 + IAI46_14470 0.12 +0.1
3,069,220 + IAI46_14470 0.12 -0.2
3,069,244 - IAI46_14470 0.13 +1.4
3,069,250 - IAI46_14470 0.14 +0.8
3,069,295 + IAI46_14470 0.17 +0.1
3,069,441 + IAI46_14470 0.26 +0.8
3,069,488 - IAI46_14470 0.29 -0.4

Or see this region's nucleotide sequence