Strain Fitness in Serratia liquefaciens MT49 around IAI46_13395

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13390 and IAI46_13395 are separated by 60 nucleotidesIAI46_13395 and IAI46_13400 are separated by 34 nucleotidesIAI46_13400 and IAI46_13405 are separated by 34 nucleotidesIAI46_13405 and IAI46_13410 are separated by 59 nucleotides IAI46_13390: IAI46_13390 - TolC family protein, at 2,861,965 to 2,863,461 _13390 IAI46_13395: IAI46_13395 - copper-translocating P-type ATPase, at 2,863,522 to 2,866,062 _13395 IAI46_13400: IAI46_13400 - glutaredoxin family protein, at 2,866,097 to 2,866,405 _13400 IAI46_13405: IAI46_13405 - Cu(I)-responsive transcriptional regulator, at 2,866,440 to 2,866,940 _13405 IAI46_13410: IAI46_13410 - heavy-metal-associated domain-containing protein, at 2,867,000 to 2,867,200 _13410 Position (kb) 2863 2864 2865 2866 2867Strain fitness (log2 ratio) -1 0 1at 2862.723 kb on - strand, within IAI46_13390at 2862.911 kb on - strand, within IAI46_13390at 2862.927 kb on - strand, within IAI46_13390at 2863.107 kb on - strand, within IAI46_13390at 2863.147 kb on + strand, within IAI46_13390at 2863.148 kb on - strand, within IAI46_13390at 2863.150 kb on - strand, within IAI46_13390at 2863.253 kb on - strand, within IAI46_13390at 2863.348 kb on + strandat 2863.351 kb on - strandat 2863.380 kb on + strandat 2863.380 kb on + strandat 2863.380 kb on + strandat 2863.507 kb on + strandat 2863.507 kb on + strandat 2863.551 kb on + strandat 2863.551 kb on + strandat 2863.552 kb on - strandat 2863.597 kb on - strandat 2863.638 kb on - strandat 2863.797 kb on + strand, within IAI46_13395at 2863.962 kb on + strand, within IAI46_13395at 2863.963 kb on - strand, within IAI46_13395at 2864.042 kb on + strand, within IAI46_13395at 2864.184 kb on + strand, within IAI46_13395at 2864.184 kb on + strand, within IAI46_13395at 2864.299 kb on + strand, within IAI46_13395at 2864.300 kb on - strand, within IAI46_13395at 2864.608 kb on + strand, within IAI46_13395at 2864.609 kb on - strand, within IAI46_13395at 2864.609 kb on - strand, within IAI46_13395at 2864.609 kb on - strand, within IAI46_13395at 2864.613 kb on - strand, within IAI46_13395at 2864.613 kb on - strand, within IAI46_13395at 2865.050 kb on + strand, within IAI46_13395at 2865.146 kb on - strand, within IAI46_13395at 2865.287 kb on + strand, within IAI46_13395at 2865.288 kb on - strand, within IAI46_13395at 2865.415 kb on + strand, within IAI46_13395at 2865.416 kb on - strand, within IAI46_13395at 2865.743 kb on + strand, within IAI46_13395at 2866.052 kb on + strandat 2866.131 kb on - strand, within IAI46_13400at 2866.131 kb on - strand, within IAI46_13400at 2866.257 kb on + strand, within IAI46_13400at 2866.258 kb on - strand, within IAI46_13400at 2866.258 kb on - strand, within IAI46_13400at 2866.258 kb on - strand, within IAI46_13400at 2866.258 kb on - strand, within IAI46_13400at 2866.258 kb on - strand, within IAI46_13400at 2866.258 kb on - strand, within IAI46_13400at 2866.261 kb on + strand, within IAI46_13400at 2866.307 kb on + strand, within IAI46_13400at 2866.413 kb on + strandat 2866.497 kb on + strand, within IAI46_13405at 2866.554 kb on + strand, within IAI46_13405at 2866.570 kb on + strand, within IAI46_13405at 2866.570 kb on + strand, within IAI46_13405at 2866.570 kb on + strand, within IAI46_13405at 2866.571 kb on - strand, within IAI46_13405at 2866.586 kb on + strand, within IAI46_13405at 2866.680 kb on - strand, within IAI46_13405at 2866.886 kb on + strand, within IAI46_13405at 2866.887 kb on - strand, within IAI46_13405at 2866.999 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,862,723 - IAI46_13390 0.51 -0.7
2,862,911 - IAI46_13390 0.63 -0.4
2,862,927 - IAI46_13390 0.64 -1.0
2,863,107 - IAI46_13390 0.76 +0.0
2,863,147 + IAI46_13390 0.79 -0.9
2,863,148 - IAI46_13390 0.79 -0.0
2,863,150 - IAI46_13390 0.79 +1.1
2,863,253 - IAI46_13390 0.86 +0.3
2,863,348 + -0.3
2,863,351 - +0.9
2,863,380 + +0.4
2,863,380 + +0.8
2,863,380 + -0.0
2,863,507 + +1.0
2,863,507 + -0.0
2,863,551 + -0.2
2,863,551 + -0.2
2,863,552 - -0.3
2,863,597 - +0.7
2,863,638 - -0.1
2,863,797 + IAI46_13395 0.11 -0.0
2,863,962 + IAI46_13395 0.17 -0.4
2,863,963 - IAI46_13395 0.17 +0.0
2,864,042 + IAI46_13395 0.20 +1.3
2,864,184 + IAI46_13395 0.26 +1.1
2,864,184 + IAI46_13395 0.26 -0.4
2,864,299 + IAI46_13395 0.31 +0.5
2,864,300 - IAI46_13395 0.31 +0.0
2,864,608 + IAI46_13395 0.43 +0.0
2,864,609 - IAI46_13395 0.43 +0.3
2,864,609 - IAI46_13395 0.43 +0.1
2,864,609 - IAI46_13395 0.43 +0.9
2,864,613 - IAI46_13395 0.43 +0.4
2,864,613 - IAI46_13395 0.43 -0.0
2,865,050 + IAI46_13395 0.60 +0.1
2,865,146 - IAI46_13395 0.64 +1.0
2,865,287 + IAI46_13395 0.69 +0.5
2,865,288 - IAI46_13395 0.70 +0.0
2,865,415 + IAI46_13395 0.74 -0.1
2,865,416 - IAI46_13395 0.75 -0.5
2,865,743 + IAI46_13395 0.87 -0.4
2,866,052 + -0.7
2,866,131 - IAI46_13400 0.11 -0.1
2,866,131 - IAI46_13400 0.11 +0.2
2,866,257 + IAI46_13400 0.52 +0.1
2,866,258 - IAI46_13400 0.52 -0.8
2,866,258 - IAI46_13400 0.52 +1.3
2,866,258 - IAI46_13400 0.52 -0.3
2,866,258 - IAI46_13400 0.52 +1.3
2,866,258 - IAI46_13400 0.52 -0.3
2,866,258 - IAI46_13400 0.52 +0.8
2,866,261 + IAI46_13400 0.53 -0.9
2,866,307 + IAI46_13400 0.68 +1.6
2,866,413 + -0.8
2,866,497 + IAI46_13405 0.11 +1.5
2,866,554 + IAI46_13405 0.23 +1.6
2,866,570 + IAI46_13405 0.26 +0.7
2,866,570 + IAI46_13405 0.26 -0.1
2,866,570 + IAI46_13405 0.26 -0.1
2,866,571 - IAI46_13405 0.26 -0.0
2,866,586 + IAI46_13405 0.29 -0.2
2,866,680 - IAI46_13405 0.48 +0.5
2,866,886 + IAI46_13405 0.89 +1.3
2,866,887 - IAI46_13405 0.89 +1.3
2,866,999 + +0.2

Or see this region's nucleotide sequence