Strain Fitness in Serratia liquefaciens MT49 around IAI46_13150

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13145 and IAI46_13150 are separated by 156 nucleotidesIAI46_13150 and IAI46_13155 are separated by 1 nucleotides IAI46_13145: IAI46_13145 - D-alanyl-D-alanine endopeptidase, at 2,804,336 to 2,805,169 _13145 IAI46_13150: IAI46_13150 - MsnO8 family LLM class oxidoreductase, at 2,805,326 to 2,806,309 _13150 IAI46_13155: IAI46_13155 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 2,806,311 to 2,807,615 _13155 Position (kb) 2805 2806 2807Strain fitness (log2 ratio) -1 0 1at 2804.891 kb on + strand, within IAI46_13145at 2805.266 kb on - strandat 2805.266 kb on - strandat 2805.289 kb on - strandat 2805.311 kb on + strandat 2805.332 kb on + strandat 2805.513 kb on - strand, within IAI46_13150at 2805.573 kb on - strand, within IAI46_13150at 2805.581 kb on + strand, within IAI46_13150at 2805.744 kb on + strand, within IAI46_13150at 2806.512 kb on - strand, within IAI46_13155at 2806.512 kb on - strand, within IAI46_13155at 2806.693 kb on + strand, within IAI46_13155at 2806.694 kb on - strand, within IAI46_13155at 2806.790 kb on - strand, within IAI46_13155at 2806.790 kb on - strand, within IAI46_13155at 2806.790 kb on - strand, within IAI46_13155at 2806.924 kb on - strand, within IAI46_13155

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,804,891 + IAI46_13145 0.67 -0.4
2,805,266 - -0.1
2,805,266 - -0.2
2,805,289 - +1.0
2,805,311 + +1.3
2,805,332 + +1.5
2,805,513 - IAI46_13150 0.19 -1.5
2,805,573 - IAI46_13150 0.25 -1.1
2,805,581 + IAI46_13150 0.26 -0.2
2,805,744 + IAI46_13150 0.42 +0.5
2,806,512 - IAI46_13155 0.15 +1.0
2,806,512 - IAI46_13155 0.15 -0.2
2,806,693 + IAI46_13155 0.29 +0.3
2,806,694 - IAI46_13155 0.29 -0.3
2,806,790 - IAI46_13155 0.37 +0.6
2,806,790 - IAI46_13155 0.37 +0.3
2,806,790 - IAI46_13155 0.37 +0.9
2,806,924 - IAI46_13155 0.47 +0.3

Or see this region's nucleotide sequence