Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_12820 and IAI46_12825 are separated by 207 nucleotides IAI46_12825 and IAI46_12830 are separated by 129 nucleotides
IAI46_12820: IAI46_12820 - 3-carboxy-cis,cis-muconate cycloisomerase, at 2,730,792 to 2,732,159
_12820
IAI46_12825: IAI46_12825 - substrate-binding domain-containing protein, at 2,732,367 to 2,733,293
_12825
IAI46_12830: IAI46_12830 - Gfo/Idh/MocA family oxidoreductase, at 2,733,423 to 2,734,544
_12830
Position (kb)
2732
2733
2734 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2731.597 kb on - strand, within IAI46_12820 at 2731.674 kb on + strand, within IAI46_12820 at 2731.675 kb on - strand, within IAI46_12820 at 2731.794 kb on + strand, within IAI46_12820 at 2731.984 kb on - strand, within IAI46_12820 at 2732.033 kb on + strand at 2732.034 kb on - strand at 2732.109 kb on - strand at 2732.152 kb on - strand at 2732.160 kb on - strand at 2732.160 kb on - strand at 2732.275 kb on - strand at 2732.369 kb on - strand at 2732.390 kb on - strand at 2732.439 kb on - strand at 2732.606 kb on + strand, within IAI46_12825 at 2732.652 kb on - strand, within IAI46_12825 at 2732.652 kb on - strand, within IAI46_12825 at 2732.709 kb on - strand, within IAI46_12825 at 2732.774 kb on + strand, within IAI46_12825 at 2732.824 kb on - strand, within IAI46_12825 at 2732.835 kb on - strand, within IAI46_12825 at 2733.051 kb on - strand, within IAI46_12825 at 2733.101 kb on + strand, within IAI46_12825 at 2733.168 kb on - strand, within IAI46_12825 at 2733.172 kb on + strand, within IAI46_12825 at 2733.172 kb on + strand, within IAI46_12825 at 2733.172 kb on + strand, within IAI46_12825 at 2733.173 kb on - strand, within IAI46_12825 at 2733.276 kb on + strand at 2733.277 kb on - strand at 2733.277 kb on - strand at 2733.294 kb on - strand at 2733.308 kb on + strand at 2733.308 kb on + strand at 2733.326 kb on - strand at 2733.378 kb on + strand at 2733.386 kb on - strand at 2733.518 kb on + strand at 2733.651 kb on - strand, within IAI46_12830 at 2733.768 kb on - strand, within IAI46_12830 at 2733.900 kb on - strand, within IAI46_12830 at 2734.108 kb on - strand, within IAI46_12830
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 2,731,597 - IAI46_12820 0.59 +0.2 2,731,674 + IAI46_12820 0.64 +0.2 2,731,675 - IAI46_12820 0.65 -0.9 2,731,794 + IAI46_12820 0.73 +0.0 2,731,984 - IAI46_12820 0.87 +0.4 2,732,033 + +1.2 2,732,034 - +1.1 2,732,109 - -0.6 2,732,152 - -0.4 2,732,160 - -0.2 2,732,160 - -0.8 2,732,275 - +0.6 2,732,369 - +0.7 2,732,390 - +0.3 2,732,439 - +0.0 2,732,606 + IAI46_12825 0.26 -1.2 2,732,652 - IAI46_12825 0.31 -2.1 2,732,652 - IAI46_12825 0.31 +1.0 2,732,709 - IAI46_12825 0.37 -0.1 2,732,774 + IAI46_12825 0.44 +0.9 2,732,824 - IAI46_12825 0.49 +0.5 2,732,835 - IAI46_12825 0.50 -0.6 2,733,051 - IAI46_12825 0.74 -0.2 2,733,101 + IAI46_12825 0.79 +1.0 2,733,168 - IAI46_12825 0.86 +1.0 2,733,172 + IAI46_12825 0.87 +0.6 2,733,172 + IAI46_12825 0.87 -0.5 2,733,172 + IAI46_12825 0.87 +0.1 2,733,173 - IAI46_12825 0.87 -1.1 2,733,276 + +1.2 2,733,277 - -0.3 2,733,277 - +1.4 2,733,294 - -0.1 2,733,308 + +2.1 2,733,308 + -0.4 2,733,326 - +1.3 2,733,378 + -0.4 2,733,386 - -0.6 2,733,518 + -0.1 2,733,651 - IAI46_12830 0.20 -0.8 2,733,768 - IAI46_12830 0.31 -0.2 2,733,900 - IAI46_12830 0.43 +1.2 2,734,108 - IAI46_12830 0.61 +0.2
Or see this region's nucleotide sequence