Strain Fitness in Serratia liquefaciens MT49 around IAI46_12785

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12780 and IAI46_12785 are separated by 91 nucleotidesIAI46_12785 and IAI46_12790 are separated by 89 nucleotidesIAI46_12790 and IAI46_12795 are separated by 136 nucleotides IAI46_12780: IAI46_12780 - 2-hydroxyacid dehydrogenase, at 2,723,076 to 2,724,026 _12780 IAI46_12785: IAI46_12785 - MFS transporter, at 2,724,118 to 2,725,425 _12785 IAI46_12790: IAI46_12790 - MurR/RpiR family transcriptional regulator, at 2,725,515 to 2,726,249 _12790 IAI46_12795: IAI46_12795 - 6-phospho-beta-glucosidase, at 2,726,386 to 2,727,822 _12795 Position (kb) 2724 2725 2726Strain fitness (log2 ratio) -2 -1 0 1 2at 2723.173 kb on - strand, within IAI46_12780at 2723.278 kb on + strand, within IAI46_12780at 2723.278 kb on + strand, within IAI46_12780at 2723.337 kb on + strand, within IAI46_12780at 2723.337 kb on + strand, within IAI46_12780at 2723.586 kb on - strand, within IAI46_12780at 2723.659 kb on + strand, within IAI46_12780at 2723.659 kb on + strand, within IAI46_12780at 2723.681 kb on + strand, within IAI46_12780at 2723.769 kb on - strand, within IAI46_12780at 2724.104 kb on - strandat 2724.126 kb on + strandat 2724.127 kb on - strandat 2724.132 kb on - strandat 2724.438 kb on - strand, within IAI46_12785at 2724.469 kb on - strand, within IAI46_12785at 2724.657 kb on - strand, within IAI46_12785at 2724.922 kb on - strand, within IAI46_12785at 2724.983 kb on - strand, within IAI46_12785at 2725.105 kb on + strand, within IAI46_12785at 2725.255 kb on + strand, within IAI46_12785at 2725.276 kb on + strand, within IAI46_12785at 2725.277 kb on - strand, within IAI46_12785at 2725.301 kb on + strandat 2725.427 kb on + strandat 2725.514 kb on + strandat 2725.515 kb on - strandat 2725.515 kb on - strandat 2725.515 kb on - strandat 2725.572 kb on + strandat 2725.602 kb on + strand, within IAI46_12790at 2725.602 kb on + strand, within IAI46_12790at 2725.602 kb on + strand, within IAI46_12790at 2725.602 kb on + strand, within IAI46_12790at 2725.603 kb on - strand, within IAI46_12790at 2725.940 kb on + strand, within IAI46_12790at 2725.977 kb on + strand, within IAI46_12790at 2725.977 kb on + strand, within IAI46_12790at 2725.977 kb on + strand, within IAI46_12790at 2725.980 kb on - strand, within IAI46_12790at 2726.172 kb on - strand, within IAI46_12790at 2726.297 kb on + strandat 2726.329 kb on - strandat 2726.330 kb on + strandat 2726.366 kb on - strandat 2726.383 kb on - strandat 2726.403 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,723,173 - IAI46_12780 0.10 -0.3
2,723,278 + IAI46_12780 0.21 -1.6
2,723,278 + IAI46_12780 0.21 -0.9
2,723,337 + IAI46_12780 0.27 +1.5
2,723,337 + IAI46_12780 0.27 +0.8
2,723,586 - IAI46_12780 0.54 -0.7
2,723,659 + IAI46_12780 0.61 +1.2
2,723,659 + IAI46_12780 0.61 +1.4
2,723,681 + IAI46_12780 0.64 -0.2
2,723,769 - IAI46_12780 0.73 +1.4
2,724,104 - +0.2
2,724,126 + +0.5
2,724,127 - -0.1
2,724,132 - +0.8
2,724,438 - IAI46_12785 0.24 +0.8
2,724,469 - IAI46_12785 0.27 -1.1
2,724,657 - IAI46_12785 0.41 +0.6
2,724,922 - IAI46_12785 0.61 +0.3
2,724,983 - IAI46_12785 0.66 -1.6
2,725,105 + IAI46_12785 0.75 -0.1
2,725,255 + IAI46_12785 0.87 -0.5
2,725,276 + IAI46_12785 0.89 -0.5
2,725,277 - IAI46_12785 0.89 -1.2
2,725,301 + -0.1
2,725,427 + +0.4
2,725,514 + -0.2
2,725,515 - +0.3
2,725,515 - -0.3
2,725,515 - +1.0
2,725,572 + +0.5
2,725,602 + IAI46_12790 0.12 +0.1
2,725,602 + IAI46_12790 0.12 +0.7
2,725,602 + IAI46_12790 0.12 +2.2
2,725,602 + IAI46_12790 0.12 +1.2
2,725,603 - IAI46_12790 0.12 -0.5
2,725,940 + IAI46_12790 0.58 +0.2
2,725,977 + IAI46_12790 0.63 +0.0
2,725,977 + IAI46_12790 0.63 +1.2
2,725,977 + IAI46_12790 0.63 +0.6
2,725,980 - IAI46_12790 0.63 +1.1
2,726,172 - IAI46_12790 0.89 +0.5
2,726,297 + -1.9
2,726,329 - +0.9
2,726,330 + +0.5
2,726,366 - +1.4
2,726,383 - -0.1
2,726,403 - +0.2

Or see this region's nucleotide sequence