Strain Fitness in Serratia liquefaciens MT49 around IAI46_12765

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12760 and IAI46_12765 are separated by 260 nucleotidesIAI46_12765 and IAI46_12770 overlap by 4 nucleotides IAI46_12760: IAI46_12760 - DMT family transporter, at 2,717,131 to 2,718,042 _12760 IAI46_12765: IAI46_12765 - cytochrome c, at 2,718,303 to 2,719,601 _12765 IAI46_12770: IAI46_12770 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 2,719,598 to 2,721,880 _12770 Position (kb) 2718 2719 2720Strain fitness (log2 ratio) -2 -1 0 1 2at 2717.392 kb on + strand, within IAI46_12760at 2717.393 kb on - strand, within IAI46_12760at 2717.429 kb on - strand, within IAI46_12760at 2717.445 kb on + strand, within IAI46_12760at 2717.620 kb on - strand, within IAI46_12760at 2717.620 kb on - strand, within IAI46_12760at 2717.623 kb on + strand, within IAI46_12760at 2717.623 kb on + strand, within IAI46_12760at 2717.624 kb on - strand, within IAI46_12760at 2717.873 kb on - strand, within IAI46_12760at 2718.119 kb on + strandat 2718.155 kb on - strandat 2718.392 kb on - strandat 2718.447 kb on - strand, within IAI46_12765at 2718.447 kb on - strand, within IAI46_12765at 2718.599 kb on + strand, within IAI46_12765at 2718.693 kb on - strand, within IAI46_12765at 2718.710 kb on - strand, within IAI46_12765at 2718.721 kb on + strand, within IAI46_12765at 2718.721 kb on + strand, within IAI46_12765at 2719.181 kb on - strand, within IAI46_12765at 2719.246 kb on + strand, within IAI46_12765at 2719.247 kb on - strand, within IAI46_12765at 2719.348 kb on + strand, within IAI46_12765at 2719.652 kb on + strandat 2719.652 kb on + strandat 2719.670 kb on - strandat 2719.765 kb on + strandat 2719.991 kb on - strand, within IAI46_12770at 2720.086 kb on - strand, within IAI46_12770at 2720.224 kb on - strand, within IAI46_12770

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,717,392 + IAI46_12760 0.29 +0.1
2,717,393 - IAI46_12760 0.29 +1.1
2,717,429 - IAI46_12760 0.33 +0.5
2,717,445 + IAI46_12760 0.34 -0.2
2,717,620 - IAI46_12760 0.54 -0.4
2,717,620 - IAI46_12760 0.54 -0.5
2,717,623 + IAI46_12760 0.54 -1.8
2,717,623 + IAI46_12760 0.54 +0.5
2,717,624 - IAI46_12760 0.54 -0.6
2,717,873 - IAI46_12760 0.81 -0.2
2,718,119 + -0.2
2,718,155 - +0.9
2,718,392 - +2.0
2,718,447 - IAI46_12765 0.11 -0.2
2,718,447 - IAI46_12765 0.11 +1.5
2,718,599 + IAI46_12765 0.23 -1.1
2,718,693 - IAI46_12765 0.30 -0.9
2,718,710 - IAI46_12765 0.31 -0.1
2,718,721 + IAI46_12765 0.32 +0.2
2,718,721 + IAI46_12765 0.32 +0.8
2,719,181 - IAI46_12765 0.68 +0.6
2,719,246 + IAI46_12765 0.73 +0.4
2,719,247 - IAI46_12765 0.73 -0.8
2,719,348 + IAI46_12765 0.80 +1.2
2,719,652 + -2.1
2,719,652 + +0.8
2,719,670 - +0.5
2,719,765 + -0.9
2,719,991 - IAI46_12770 0.17 -0.7
2,720,086 - IAI46_12770 0.21 +0.1
2,720,224 - IAI46_12770 0.27 +0.7

Or see this region's nucleotide sequence