Strain Fitness in Serratia liquefaciens MT49 around IAI46_12395

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12390 and IAI46_12395 are separated by 201 nucleotidesIAI46_12395 and IAI46_12400 are separated by 306 nucleotides IAI46_12390: IAI46_12390 - heavy metal response regulator transcription factor, at 2,631,084 to 2,631,761 _12390 IAI46_12395: IAI46_12395 - alpha/beta hydrolase, at 2,631,963 to 2,633,015 _12395 IAI46_12400: IAI46_12400 - aspartate aminotransferase family protein, at 2,633,322 to 2,634,794 _12400 Position (kb) 2631 2632 2633 2634Strain fitness (log2 ratio) -1 0 1 2at 2631.104 kb on + strandat 2631.105 kb on - strandat 2631.305 kb on + strand, within IAI46_12390at 2631.323 kb on + strand, within IAI46_12390at 2631.359 kb on + strand, within IAI46_12390at 2631.386 kb on + strand, within IAI46_12390at 2631.390 kb on - strand, within IAI46_12390at 2631.420 kb on + strand, within IAI46_12390at 2631.472 kb on + strand, within IAI46_12390at 2631.540 kb on + strand, within IAI46_12390at 2631.634 kb on + strand, within IAI46_12390at 2631.646 kb on + strand, within IAI46_12390at 2631.750 kb on + strandat 2631.831 kb on + strandat 2631.895 kb on + strandat 2632.218 kb on - strand, within IAI46_12395at 2632.391 kb on + strand, within IAI46_12395at 2632.507 kb on + strand, within IAI46_12395at 2632.636 kb on - strand, within IAI46_12395at 2632.754 kb on + strand, within IAI46_12395at 2632.755 kb on - strand, within IAI46_12395at 2632.755 kb on - strand, within IAI46_12395at 2632.861 kb on - strand, within IAI46_12395at 2632.948 kb on - strandat 2632.962 kb on + strandat 2632.978 kb on + strandat 2632.983 kb on - strandat 2633.010 kb on - strandat 2633.091 kb on + strandat 2633.142 kb on + strandat 2633.143 kb on - strandat 2633.197 kb on + strandat 2633.277 kb on + strandat 2633.278 kb on - strandat 2633.278 kb on - strandat 2633.614 kb on + strand, within IAI46_12400at 2633.792 kb on - strand, within IAI46_12400at 2633.819 kb on - strand, within IAI46_12400at 2633.924 kb on - strand, within IAI46_12400at 2633.932 kb on + strand, within IAI46_12400at 2633.933 kb on - strand, within IAI46_12400

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,631,104 + -0.2
2,631,105 - -0.8
2,631,305 + IAI46_12390 0.33 +0.9
2,631,323 + IAI46_12390 0.35 -0.2
2,631,359 + IAI46_12390 0.41 +0.9
2,631,386 + IAI46_12390 0.45 -0.1
2,631,390 - IAI46_12390 0.45 +0.8
2,631,420 + IAI46_12390 0.50 +0.9
2,631,472 + IAI46_12390 0.57 +0.4
2,631,540 + IAI46_12390 0.67 -0.1
2,631,634 + IAI46_12390 0.81 +0.4
2,631,646 + IAI46_12390 0.83 -0.8
2,631,750 + -0.4
2,631,831 + +0.7
2,631,895 + +0.2
2,632,218 - IAI46_12395 0.24 -0.8
2,632,391 + IAI46_12395 0.41 +0.8
2,632,507 + IAI46_12395 0.52 +1.8
2,632,636 - IAI46_12395 0.64 -0.2
2,632,754 + IAI46_12395 0.75 +1.0
2,632,755 - IAI46_12395 0.75 +0.8
2,632,755 - IAI46_12395 0.75 -0.4
2,632,861 - IAI46_12395 0.85 +1.2
2,632,948 - -0.7
2,632,962 + -1.1
2,632,978 + +0.4
2,632,983 - +1.4
2,633,010 - +0.7
2,633,091 + +0.8
2,633,142 + -0.4
2,633,143 - -0.5
2,633,197 + +0.2
2,633,277 + -0.1
2,633,278 - +0.5
2,633,278 - +0.2
2,633,614 + IAI46_12400 0.20 +1.1
2,633,792 - IAI46_12400 0.32 +0.1
2,633,819 - IAI46_12400 0.34 +1.4
2,633,924 - IAI46_12400 0.41 -0.4
2,633,932 + IAI46_12400 0.41 +1.2
2,633,933 - IAI46_12400 0.41 -1.7

Or see this region's nucleotide sequence