Strain Fitness in Serratia liquefaciens MT49 around IAI46_11785

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11780 and IAI46_11785 overlap by 4 nucleotidesIAI46_11785 and IAI46_11790 overlap by 8 nucleotides IAI46_11780: IAI46_11780 - guanine deaminase, at 2,486,297 to 2,487,628 _11780 IAI46_11785: IAI46_11785 - xanthine dehydrogenase small subunit, at 2,487,625 to 2,489,055 _11785 IAI46_11790: IAI46_11790 - xanthine dehydrogenase molybdopterin binding subunit, at 2,489,048 to 2,491,450 _11790 Position (kb) 2487 2488 2489 2490Strain fitness (log2 ratio) -2 -1 0 1at 2486.683 kb on - strand, within IAI46_11780at 2486.710 kb on - strand, within IAI46_11780at 2486.710 kb on - strand, within IAI46_11780at 2486.901 kb on - strand, within IAI46_11780at 2487.292 kb on + strand, within IAI46_11780at 2487.320 kb on + strand, within IAI46_11780at 2487.320 kb on + strand, within IAI46_11780at 2487.320 kb on + strand, within IAI46_11780at 2487.575 kb on + strandat 2487.575 kb on + strandat 2487.576 kb on - strandat 2488.003 kb on + strand, within IAI46_11785at 2488.332 kb on + strand, within IAI46_11785at 2488.435 kb on + strand, within IAI46_11785at 2488.436 kb on - strand, within IAI46_11785at 2488.550 kb on + strand, within IAI46_11785at 2488.767 kb on + strand, within IAI46_11785at 2488.929 kb on + strandat 2489.053 kb on + strandat 2489.053 kb on + strandat 2489.053 kb on + strandat 2489.181 kb on - strandat 2489.181 kb on - strandat 2489.282 kb on + strandat 2489.326 kb on - strand, within IAI46_11790at 2489.384 kb on - strand, within IAI46_11790at 2489.393 kb on + strand, within IAI46_11790at 2489.394 kb on - strand, within IAI46_11790at 2489.394 kb on - strand, within IAI46_11790at 2489.474 kb on + strand, within IAI46_11790at 2489.942 kb on + strand, within IAI46_11790

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,486,683 - IAI46_11780 0.29 -0.8
2,486,710 - IAI46_11780 0.31 +0.3
2,486,710 - IAI46_11780 0.31 +0.2
2,486,901 - IAI46_11780 0.45 -0.5
2,487,292 + IAI46_11780 0.75 +0.0
2,487,320 + IAI46_11780 0.77 -0.4
2,487,320 + IAI46_11780 0.77 +0.0
2,487,320 + IAI46_11780 0.77 +0.9
2,487,575 + -0.2
2,487,575 + +0.5
2,487,576 - +0.2
2,488,003 + IAI46_11785 0.26 -0.1
2,488,332 + IAI46_11785 0.49 +1.4
2,488,435 + IAI46_11785 0.57 +0.8
2,488,436 - IAI46_11785 0.57 -1.9
2,488,550 + IAI46_11785 0.65 +0.4
2,488,767 + IAI46_11785 0.80 -1.5
2,488,929 + +0.8
2,489,053 + +0.7
2,489,053 + +0.2
2,489,053 + +0.1
2,489,181 - -0.2
2,489,181 - -0.4
2,489,282 + +0.5
2,489,326 - IAI46_11790 0.12 -0.0
2,489,384 - IAI46_11790 0.14 +0.0
2,489,393 + IAI46_11790 0.14 +1.1
2,489,394 - IAI46_11790 0.14 +0.2
2,489,394 - IAI46_11790 0.14 +0.4
2,489,474 + IAI46_11790 0.18 +0.7
2,489,942 + IAI46_11790 0.37 +0.4

Or see this region's nucleotide sequence