Strain Fitness in Serratia liquefaciens MT49 around IAI46_10870

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10865 and IAI46_10870 are separated by 260 nucleotidesIAI46_10870 and IAI46_10875 are separated by 37 nucleotidesIAI46_10875 and IAI46_10880 overlap by 1 nucleotides IAI46_10865: IAI46_10865 - fructosamine kinase family protein, at 2,297,519 to 2,298,388 _10865 IAI46_10870: IAI46_10870 - GNAT family N-acetyltransferase, at 2,298,649 to 2,299,098 _10870 IAI46_10875: IAI46_10875 - metal ABC transporter permease, at 2,299,136 to 2,299,996 _10875 IAI46_10880: IAI46_10880 - iron/manganese ABC transporter permease subunit YfeC, at 2,299,996 to 2,300,856 _10880 Position (kb) 2298 2299 2300Strain fitness (log2 ratio) -2 -1 0 1at 2297.749 kb on - strand, within IAI46_10865at 2298.095 kb on + strand, within IAI46_10865at 2298.153 kb on - strand, within IAI46_10865at 2298.185 kb on - strand, within IAI46_10865at 2298.363 kb on - strandat 2298.514 kb on + strandat 2298.515 kb on - strandat 2298.515 kb on - strandat 2298.518 kb on + strandat 2298.518 kb on + strandat 2298.518 kb on + strandat 2298.519 kb on - strandat 2298.519 kb on - strandat 2298.536 kb on - strandat 2298.536 kb on - strandat 2298.539 kb on + strandat 2298.589 kb on + strandat 2298.594 kb on + strandat 2298.594 kb on + strandat 2298.619 kb on + strandat 2298.623 kb on + strandat 2298.623 kb on + strandat 2298.624 kb on - strandat 2298.863 kb on - strand, within IAI46_10870at 2298.985 kb on - strand, within IAI46_10870at 2298.985 kb on - strand, within IAI46_10870at 2298.985 kb on - strand, within IAI46_10870at 2299.015 kb on + strand, within IAI46_10870at 2299.030 kb on + strand, within IAI46_10870at 2299.066 kb on - strandat 2299.085 kb on - strandat 2299.195 kb on - strandat 2299.319 kb on + strand, within IAI46_10875at 2299.556 kb on - strand, within IAI46_10875at 2299.556 kb on - strand, within IAI46_10875at 2299.610 kb on - strand, within IAI46_10875at 2299.610 kb on - strand, within IAI46_10875at 2299.768 kb on + strand, within IAI46_10875at 2299.957 kb on - strandat 2299.983 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,297,749 - IAI46_10865 0.26 -1.0
2,298,095 + IAI46_10865 0.66 +0.6
2,298,153 - IAI46_10865 0.73 -0.4
2,298,185 - IAI46_10865 0.77 +0.8
2,298,363 - -0.2
2,298,514 + +0.3
2,298,515 - -1.0
2,298,515 - +0.2
2,298,518 + +0.9
2,298,518 + +0.2
2,298,518 + +0.1
2,298,519 - +0.9
2,298,519 - -0.2
2,298,536 - -1.0
2,298,536 - -0.2
2,298,539 + -0.2
2,298,589 + -0.2
2,298,594 + +0.3
2,298,594 + +1.1
2,298,619 + +1.0
2,298,623 + +0.1
2,298,623 + +1.0
2,298,624 - -1.8
2,298,863 - IAI46_10870 0.48 -1.2
2,298,985 - IAI46_10870 0.75 -1.2
2,298,985 - IAI46_10870 0.75 +0.9
2,298,985 - IAI46_10870 0.75 +0.0
2,299,015 + IAI46_10870 0.81 +0.5
2,299,030 + IAI46_10870 0.85 +0.4
2,299,066 - -0.1
2,299,085 - +0.3
2,299,195 - +0.2
2,299,319 + IAI46_10875 0.21 +0.2
2,299,556 - IAI46_10875 0.49 +0.1
2,299,556 - IAI46_10875 0.49 +0.5
2,299,610 - IAI46_10875 0.55 -0.7
2,299,610 - IAI46_10875 0.55 -0.2
2,299,768 + IAI46_10875 0.73 -0.1
2,299,957 - +0.9
2,299,983 + +0.3

Or see this region's nucleotide sequence