Strain Fitness in Serratia liquefaciens MT49 around IAI46_10365

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10355 and IAI46_10360 are separated by 85 nucleotidesIAI46_10360 and IAI46_10365 are separated by 23 nucleotidesIAI46_10365 and IAI46_10370 are separated by 23 nucleotides IAI46_10355: IAI46_10355 - NAD-dependent protein deacylase, at 2,187,436 to 2,188,272 _10355 IAI46_10360: IAI46_10360 - MurR/RpiR family transcriptional regulator, at 2,188,358 to 2,189,071 _10360 IAI46_10365: IAI46_10365 - glycoside hydrolase, at 2,189,095 to 2,190,480 _10365 IAI46_10370: IAI46_10370 - PTS transporter subunit EIIC, at 2,190,504 to 2,192,063 _10370 Position (kb) 2189 2190 2191Strain fitness (log2 ratio) -2 -1 0 1at 2188.134 kb on + strand, within IAI46_10355at 2188.134 kb on + strand, within IAI46_10355at 2188.214 kb on + strandat 2188.374 kb on + strandat 2188.374 kb on + strandat 2188.375 kb on - strandat 2188.423 kb on + strandat 2188.423 kb on + strandat 2188.554 kb on - strand, within IAI46_10360at 2188.712 kb on + strand, within IAI46_10360at 2188.712 kb on + strand, within IAI46_10360at 2188.713 kb on - strand, within IAI46_10360at 2188.718 kb on + strand, within IAI46_10360at 2188.718 kb on + strand, within IAI46_10360at 2188.718 kb on + strand, within IAI46_10360at 2188.719 kb on - strand, within IAI46_10360at 2188.751 kb on + strand, within IAI46_10360at 2188.752 kb on - strand, within IAI46_10360at 2188.752 kb on - strand, within IAI46_10360at 2188.811 kb on - strand, within IAI46_10360at 2188.882 kb on + strand, within IAI46_10360at 2188.883 kb on - strand, within IAI46_10360at 2188.886 kb on - strand, within IAI46_10360at 2188.985 kb on - strand, within IAI46_10360at 2188.985 kb on - strand, within IAI46_10360at 2189.086 kb on + strandat 2189.096 kb on + strandat 2189.097 kb on - strandat 2189.115 kb on - strandat 2189.427 kb on + strand, within IAI46_10365at 2189.432 kb on - strand, within IAI46_10365at 2189.576 kb on + strand, within IAI46_10365at 2189.729 kb on + strand, within IAI46_10365at 2189.730 kb on - strand, within IAI46_10365at 2189.730 kb on - strand, within IAI46_10365at 2189.732 kb on + strand, within IAI46_10365at 2189.732 kb on + strand, within IAI46_10365at 2189.735 kb on + strand, within IAI46_10365at 2189.738 kb on + strand, within IAI46_10365at 2189.739 kb on - strand, within IAI46_10365at 2189.739 kb on - strand, within IAI46_10365at 2189.808 kb on + strand, within IAI46_10365at 2189.808 kb on + strand, within IAI46_10365at 2189.983 kb on + strand, within IAI46_10365at 2190.104 kb on + strand, within IAI46_10365at 2190.104 kb on + strand, within IAI46_10365at 2190.123 kb on + strand, within IAI46_10365at 2190.249 kb on + strand, within IAI46_10365at 2190.250 kb on - strand, within IAI46_10365at 2190.250 kb on - strand, within IAI46_10365at 2190.252 kb on - strand, within IAI46_10365at 2190.348 kb on - strandat 2190.651 kb on + strandat 2190.652 kb on - strandat 2190.693 kb on - strand, within IAI46_10370at 2190.736 kb on - strand, within IAI46_10370at 2190.781 kb on + strand, within IAI46_10370at 2190.827 kb on + strand, within IAI46_10370at 2190.863 kb on - strand, within IAI46_10370at 2191.165 kb on + strand, within IAI46_10370at 2191.166 kb on - strand, within IAI46_10370at 2191.270 kb on + strand, within IAI46_10370at 2191.271 kb on - strand, within IAI46_10370at 2191.271 kb on - strand, within IAI46_10370at 2191.271 kb on - strand, within IAI46_10370at 2191.317 kb on + strand, within IAI46_10370at 2191.408 kb on + strand, within IAI46_10370

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,188,134 + IAI46_10355 0.83 +0.5
2,188,134 + IAI46_10355 0.83 +1.0
2,188,214 + +0.5
2,188,374 + -0.2
2,188,374 + -0.6
2,188,375 - +0.6
2,188,423 + +0.6
2,188,423 + +0.2
2,188,554 - IAI46_10360 0.27 -0.9
2,188,712 + IAI46_10360 0.50 +0.4
2,188,712 + IAI46_10360 0.50 -1.9
2,188,713 - IAI46_10360 0.50 +0.1
2,188,718 + IAI46_10360 0.50 -0.4
2,188,718 + IAI46_10360 0.50 -0.7
2,188,718 + IAI46_10360 0.50 -0.1
2,188,719 - IAI46_10360 0.51 -0.6
2,188,751 + IAI46_10360 0.55 +0.4
2,188,752 - IAI46_10360 0.55 -0.3
2,188,752 - IAI46_10360 0.55 +1.4
2,188,811 - IAI46_10360 0.63 -0.4
2,188,882 + IAI46_10360 0.73 +1.3
2,188,883 - IAI46_10360 0.74 +0.3
2,188,886 - IAI46_10360 0.74 +1.4
2,188,985 - IAI46_10360 0.88 -0.3
2,188,985 - IAI46_10360 0.88 +0.1
2,189,086 + +0.1
2,189,096 + +0.7
2,189,097 - +0.8
2,189,115 - +0.9
2,189,427 + IAI46_10365 0.24 +1.0
2,189,432 - IAI46_10365 0.24 -0.2
2,189,576 + IAI46_10365 0.35 +0.2
2,189,729 + IAI46_10365 0.46 +0.6
2,189,730 - IAI46_10365 0.46 -0.2
2,189,730 - IAI46_10365 0.46 +0.2
2,189,732 + IAI46_10365 0.46 -0.1
2,189,732 + IAI46_10365 0.46 -0.1
2,189,735 + IAI46_10365 0.46 +1.0
2,189,738 + IAI46_10365 0.46 +0.8
2,189,739 - IAI46_10365 0.46 +1.1
2,189,739 - IAI46_10365 0.46 +0.4
2,189,808 + IAI46_10365 0.51 +0.6
2,189,808 + IAI46_10365 0.51 -0.3
2,189,983 + IAI46_10365 0.64 -0.3
2,190,104 + IAI46_10365 0.73 +0.4
2,190,104 + IAI46_10365 0.73 -0.8
2,190,123 + IAI46_10365 0.74 -1.6
2,190,249 + IAI46_10365 0.83 +0.5
2,190,250 - IAI46_10365 0.83 -1.2
2,190,250 - IAI46_10365 0.83 +0.1
2,190,252 - IAI46_10365 0.83 +0.8
2,190,348 - -0.9
2,190,651 + -0.6
2,190,652 - -0.2
2,190,693 - IAI46_10370 0.12 +0.3
2,190,736 - IAI46_10370 0.15 -0.0
2,190,781 + IAI46_10370 0.18 +0.0
2,190,827 + IAI46_10370 0.21 +0.2
2,190,863 - IAI46_10370 0.23 -0.2
2,191,165 + IAI46_10370 0.42 +0.2
2,191,166 - IAI46_10370 0.42 +0.7
2,191,270 + IAI46_10370 0.49 -0.3
2,191,271 - IAI46_10370 0.49 +1.2
2,191,271 - IAI46_10370 0.49 -0.8
2,191,271 - IAI46_10370 0.49 +0.4
2,191,317 + IAI46_10370 0.52 +0.5
2,191,408 + IAI46_10370 0.58 +0.0

Or see this region's nucleotide sequence