Strain Fitness in Serratia liquefaciens MT49 around IAI46_10280

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10275 and IAI46_10280 are separated by 31 nucleotidesIAI46_10280 and IAI46_10285 overlap by 1 nucleotidesIAI46_10285 and IAI46_10290 are separated by 13 nucleotides IAI46_10275: IAI46_10275 - glutamyl-tRNA reductase, at 2,168,527 to 2,169,789 _10275 IAI46_10280: IAI46_10280 - peptide chain release factor 1, at 2,169,821 to 2,170,906 _10280 IAI46_10285: IAI46_10285 - peptide chain release factor N(5)-glutamine methyltransferase, at 2,170,906 to 2,171,778 _10285 IAI46_10290: IAI46_10290 - SirB2 family protein, at 2,171,792 to 2,172,190 _10290 Position (kb) 2169 2170 2171Strain fitness (log2 ratio) -1 0 1at 2169.787 kb on + strandat 2169.787 kb on + strandat 2170.904 kb on + strandat 2170.904 kb on + strandat 2170.904 kb on + strandat 2171.113 kb on + strand, within IAI46_10285at 2171.113 kb on + strand, within IAI46_10285at 2171.113 kb on + strand, within IAI46_10285at 2171.462 kb on - strand, within IAI46_10285at 2171.757 kb on + strandat 2171.781 kb on - strandat 2171.846 kb on - strand, within IAI46_10290at 2171.846 kb on - strand, within IAI46_10290

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,169,787 + -0.6
2,169,787 + -1.6
2,170,904 + -0.3
2,170,904 + +1.1
2,170,904 + +0.6
2,171,113 + IAI46_10285 0.24 -0.7
2,171,113 + IAI46_10285 0.24 -1.4
2,171,113 + IAI46_10285 0.24 -0.2
2,171,462 - IAI46_10285 0.64 -0.2
2,171,757 + +0.1
2,171,781 - +1.4
2,171,846 - IAI46_10290 0.14 -0.6
2,171,846 - IAI46_10290 0.14 +0.1

Or see this region's nucleotide sequence