Strain Fitness in Serratia liquefaciens MT49 around IAI46_10150

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10140 and IAI46_10145 are separated by 117 nucleotidesIAI46_10145 and IAI46_10150 are separated by 33 nucleotidesIAI46_10150 and IAI46_10155 overlap by 4 nucleotidesIAI46_10155 and IAI46_10160 are separated by 480 nucleotides IAI46_10140: IAI46_10140 - carbon-nitrogen hydrolase family protein, at 2,139,526 to 2,140,347 _10140 IAI46_10145: IAI46_10145 - hypothetical protein, at 2,140,465 to 2,140,983 _10145 IAI46_10150: IAI46_10150 - Rho-binding antiterminator, at 2,141,017 to 2,141,268 _10150 IAI46_10155: IAI46_10155 - DUF2024 family protein, at 2,141,265 to 2,141,531 _10155 IAI46_10160: IAI46_10160 - cytochrome-c peroxidase, at 2,142,012 to 2,143,409 _10160 Position (kb) 2141 2142Strain fitness (log2 ratio) -1 0 1at 2140.026 kb on + strand, within IAI46_10140at 2140.026 kb on + strand, within IAI46_10140at 2140.026 kb on + strand, within IAI46_10140at 2140.255 kb on + strand, within IAI46_10140at 2140.381 kb on - strandat 2140.412 kb on + strandat 2140.413 kb on - strandat 2140.415 kb on + strandat 2140.416 kb on - strandat 2140.474 kb on - strandat 2140.678 kb on - strand, within IAI46_10145at 2140.786 kb on + strand, within IAI46_10145at 2140.916 kb on + strand, within IAI46_10145at 2141.019 kb on - strandat 2141.116 kb on - strand, within IAI46_10150at 2141.229 kb on - strand, within IAI46_10150at 2141.258 kb on + strandat 2141.322 kb on - strand, within IAI46_10155at 2141.322 kb on - strand, within IAI46_10155at 2141.385 kb on - strand, within IAI46_10155at 2141.429 kb on - strand, within IAI46_10155at 2141.482 kb on + strand, within IAI46_10155at 2141.528 kb on - strandat 2141.532 kb on - strandat 2141.535 kb on + strandat 2141.675 kb on - strandat 2141.698 kb on - strandat 2141.899 kb on - strandat 2141.930 kb on + strandat 2141.937 kb on + strandat 2141.959 kb on - strandat 2141.961 kb on + strandat 2141.964 kb on + strandat 2141.980 kb on - strandat 2141.980 kb on - strandat 2141.994 kb on - strandat 2142.000 kb on + strandat 2142.001 kb on - strandat 2142.061 kb on + strandat 2142.061 kb on + strandat 2142.062 kb on - strandat 2142.067 kb on - strandat 2142.084 kb on + strandat 2142.084 kb on + strandat 2142.110 kb on + strandat 2142.192 kb on + strand, within IAI46_10160at 2142.193 kb on - strand, within IAI46_10160at 2142.225 kb on + strand, within IAI46_10160at 2142.261 kb on + strand, within IAI46_10160at 2142.261 kb on + strand, within IAI46_10160at 2142.263 kb on - strand, within IAI46_10160

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,140,026 + IAI46_10140 0.61 +0.7
2,140,026 + IAI46_10140 0.61 -0.1
2,140,026 + IAI46_10140 0.61 -0.5
2,140,255 + IAI46_10140 0.89 +1.0
2,140,381 - -0.3
2,140,412 + -0.1
2,140,413 - +0.3
2,140,415 + +0.8
2,140,416 - -0.4
2,140,474 - +0.6
2,140,678 - IAI46_10145 0.41 -0.6
2,140,786 + IAI46_10145 0.62 +0.5
2,140,916 + IAI46_10145 0.87 +0.7
2,141,019 - +0.8
2,141,116 - IAI46_10150 0.39 -0.6
2,141,229 - IAI46_10150 0.84 +0.1
2,141,258 + +0.8
2,141,322 - IAI46_10155 0.21 +0.4
2,141,322 - IAI46_10155 0.21 +0.3
2,141,385 - IAI46_10155 0.45 +0.1
2,141,429 - IAI46_10155 0.61 -0.8
2,141,482 + IAI46_10155 0.81 -0.3
2,141,528 - +0.1
2,141,532 - +0.4
2,141,535 + +0.4
2,141,675 - +0.5
2,141,698 - -0.4
2,141,899 - -0.0
2,141,930 + -0.9
2,141,937 + +0.5
2,141,959 - +0.7
2,141,961 + +0.7
2,141,964 + -0.5
2,141,980 - +1.1
2,141,980 - -0.4
2,141,994 - +0.2
2,142,000 + +0.4
2,142,001 - +0.0
2,142,061 + +0.2
2,142,061 + +0.8
2,142,062 - +1.4
2,142,067 - -0.2
2,142,084 + -1.1
2,142,084 + +0.7
2,142,110 + +0.1
2,142,192 + IAI46_10160 0.13 +0.1
2,142,193 - IAI46_10160 0.13 -0.5
2,142,225 + IAI46_10160 0.15 +0.4
2,142,261 + IAI46_10160 0.18 +0.8
2,142,261 + IAI46_10160 0.18 +0.9
2,142,263 - IAI46_10160 0.18 +1.3

Or see this region's nucleotide sequence