Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_10040 and IAI46_10045 are separated by 7 nucleotides IAI46_10045 and IAI46_10050 are separated by 219 nucleotides IAI46_10050 and IAI46_10055 are separated by 177 nucleotides IAI46_10055 and IAI46_10060 are separated by 12 nucleotides IAI46_10060 and IAI46_10065 are separated by 42 nucleotides
IAI46_10040: IAI46_10040 - DUF2975 domain-containing protein, at 2,120,560 to 2,121,123
_10040
IAI46_10045: IAI46_10045 - helix-turn-helix transcriptional regulator, at 2,121,131 to 2,121,346
_10045
IAI46_10050: IAI46_10050 - hypothetical protein, at 2,121,566 to 2,121,790
_10050
IAI46_10055: IAI46_10055 - hypothetical protein, at 2,121,968 to 2,122,288
_10055
IAI46_10060: IAI46_10060 - hypothetical protein, at 2,122,301 to 2,122,624
_10060
IAI46_10065: IAI46_10065 - hypothetical protein, at 2,122,667 to 2,123,026
_10065
Position (kb)
2121
2122 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2120.594 kb on - strand at 2120.658 kb on + strand, within IAI46_10040 at 2120.658 kb on + strand, within IAI46_10040 at 2120.659 kb on - strand, within IAI46_10040 at 2120.700 kb on + strand, within IAI46_10040 at 2120.722 kb on + strand, within IAI46_10040 at 2120.722 kb on + strand, within IAI46_10040 at 2120.723 kb on - strand, within IAI46_10040 at 2120.812 kb on + strand, within IAI46_10040 at 2120.816 kb on - strand, within IAI46_10040 at 2120.858 kb on - strand, within IAI46_10040 at 2120.886 kb on + strand, within IAI46_10040 at 2121.141 kb on + strand at 2121.144 kb on + strand at 2121.144 kb on + strand at 2121.277 kb on + strand, within IAI46_10045 at 2121.382 kb on + strand at 2121.382 kb on + strand at 2121.394 kb on - strand at 2121.420 kb on + strand at 2121.460 kb on + strand at 2121.526 kb on + strand at 2121.800 kb on + strand at 2121.897 kb on - strand at 2122.041 kb on - strand, within IAI46_10055 at 2122.171 kb on + strand, within IAI46_10055 at 2122.186 kb on + strand, within IAI46_10055 at 2122.274 kb on - strand at 2122.475 kb on + strand, within IAI46_10060 at 2122.479 kb on + strand, within IAI46_10060 at 2122.480 kb on - strand, within IAI46_10060 at 2122.563 kb on + strand, within IAI46_10060 at 2122.622 kb on + strand at 2122.648 kb on + strand at 2122.649 kb on - strand at 2122.739 kb on + strand, within IAI46_10065 at 2122.739 kb on + strand, within IAI46_10065 at 2122.739 kb on + strand, within IAI46_10065 at 2122.739 kb on + strand, within IAI46_10065
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 2,120,594 - -0.1 2,120,658 + IAI46_10040 0.17 +2.1 2,120,658 + IAI46_10040 0.17 +0.9 2,120,659 - IAI46_10040 0.18 -0.7 2,120,700 + IAI46_10040 0.25 -0.7 2,120,722 + IAI46_10040 0.29 +0.5 2,120,722 + IAI46_10040 0.29 +1.9 2,120,723 - IAI46_10040 0.29 -2.2 2,120,812 + IAI46_10040 0.45 +0.4 2,120,816 - IAI46_10040 0.45 +0.8 2,120,858 - IAI46_10040 0.53 +0.6 2,120,886 + IAI46_10040 0.58 +1.3 2,121,141 + +0.3 2,121,144 + +0.3 2,121,144 + +0.0 2,121,277 + IAI46_10045 0.68 +0.6 2,121,382 + +1.0 2,121,382 + +0.9 2,121,394 - -0.2 2,121,420 + -0.5 2,121,460 + +0.6 2,121,526 + -0.1 2,121,800 + +0.4 2,121,897 - -0.0 2,122,041 - IAI46_10055 0.23 -0.8 2,122,171 + IAI46_10055 0.63 +0.4 2,122,186 + IAI46_10055 0.68 -1.7 2,122,274 - -0.7 2,122,475 + IAI46_10060 0.54 -0.2 2,122,479 + IAI46_10060 0.55 -0.2 2,122,480 - IAI46_10060 0.55 -0.4 2,122,563 + IAI46_10060 0.81 +0.6 2,122,622 + +0.4 2,122,648 + -0.8 2,122,649 - -0.7 2,122,739 + IAI46_10065 0.20 -0.9 2,122,739 + IAI46_10065 0.20 -0.3 2,122,739 + IAI46_10065 0.20 +0.6 2,122,739 + IAI46_10065 0.20 -0.1
Or see this region's nucleotide sequence