Strain Fitness in Serratia liquefaciens MT49 around IAI46_09935

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09930 and IAI46_09935 are separated by 296 nucleotidesIAI46_09935 and IAI46_09940 are separated by 158 nucleotidesIAI46_09940 and IAI46_09945 are separated by 392 nucleotides IAI46_09930: IAI46_09930 - efflux RND transporter periplasmic adaptor subunit, at 2,100,633 to 2,101,820 _09930 IAI46_09935: IAI46_09935 - helix-turn-helix domain-containing protein, at 2,102,117 to 2,102,473 _09935 IAI46_09940: IAI46_09940 - tRNA-Ser, at 2,102,632 to 2,102,721 _09940 IAI46_09945: IAI46_09945 - tRNA-Ser, at 2,103,114 to 2,103,203 _09945 Position (kb) 2102 2103Strain fitness (log2 ratio) -2 -1 0 1at 2101.144 kb on + strand, within IAI46_09930at 2101.144 kb on + strand, within IAI46_09930at 2101.144 kb on + strand, within IAI46_09930at 2101.144 kb on + strand, within IAI46_09930at 2101.144 kb on + strand, within IAI46_09930at 2101.144 kb on + strand, within IAI46_09930at 2101.144 kb on + strand, within IAI46_09930at 2101.144 kb on + strand, within IAI46_09930at 2101.144 kb on + strand, within IAI46_09930at 2101.145 kb on - strand, within IAI46_09930at 2101.145 kb on - strand, within IAI46_09930at 2101.145 kb on - strand, within IAI46_09930at 2101.279 kb on - strand, within IAI46_09930at 2101.360 kb on - strand, within IAI46_09930at 2101.487 kb on + strand, within IAI46_09930at 2101.488 kb on - strand, within IAI46_09930at 2101.498 kb on - strand, within IAI46_09930at 2101.502 kb on + strand, within IAI46_09930at 2101.502 kb on + strand, within IAI46_09930at 2101.543 kb on + strand, within IAI46_09930at 2101.544 kb on - strand, within IAI46_09930at 2101.562 kb on - strand, within IAI46_09930at 2101.617 kb on - strand, within IAI46_09930at 2101.967 kb on - strandat 2101.972 kb on - strandat 2101.985 kb on - strandat 2102.002 kb on + strandat 2102.003 kb on - strandat 2102.068 kb on - strandat 2102.090 kb on - strandat 2102.123 kb on - strandat 2102.123 kb on - strandat 2102.135 kb on - strandat 2102.135 kb on - strandat 2102.236 kb on + strand, within IAI46_09935at 2102.237 kb on - strand, within IAI46_09935at 2102.273 kb on + strand, within IAI46_09935at 2102.274 kb on - strand, within IAI46_09935at 2102.275 kb on + strand, within IAI46_09935at 2102.529 kb on + strandat 2102.762 kb on - strandat 2102.762 kb on - strandat 2102.762 kb on - strandat 2102.764 kb on + strandat 2102.765 kb on - strandat 2102.765 kb on - strandat 2102.765 kb on - strandat 2102.765 kb on - strandat 2102.767 kb on - strandat 2102.767 kb on - strandat 2103.045 kb on - strandat 2103.064 kb on + strandat 2103.246 kb on - strandat 2103.251 kb on - strandat 2103.288 kb on + strandat 2103.289 kb on - strandat 2103.307 kb on - strandat 2103.433 kb on + strandat 2103.434 kb on - strandat 2103.435 kb on + strandat 2103.436 kb on - strandat 2103.455 kb on - strandat 2103.455 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,101,144 + IAI46_09930 0.43 -0.2
2,101,144 + IAI46_09930 0.43 +0.5
2,101,144 + IAI46_09930 0.43 +0.3
2,101,144 + IAI46_09930 0.43 -0.7
2,101,144 + IAI46_09930 0.43 +0.4
2,101,144 + IAI46_09930 0.43 +0.4
2,101,144 + IAI46_09930 0.43 +1.7
2,101,144 + IAI46_09930 0.43 -1.0
2,101,144 + IAI46_09930 0.43 -0.8
2,101,145 - IAI46_09930 0.43 +0.1
2,101,145 - IAI46_09930 0.43 +0.8
2,101,145 - IAI46_09930 0.43 +0.3
2,101,279 - IAI46_09930 0.54 -0.3
2,101,360 - IAI46_09930 0.61 +0.4
2,101,487 + IAI46_09930 0.72 +0.2
2,101,488 - IAI46_09930 0.72 -1.2
2,101,498 - IAI46_09930 0.73 +0.2
2,101,502 + IAI46_09930 0.73 +0.9
2,101,502 + IAI46_09930 0.73 -1.0
2,101,543 + IAI46_09930 0.77 -0.6
2,101,544 - IAI46_09930 0.77 -0.8
2,101,562 - IAI46_09930 0.78 +0.1
2,101,617 - IAI46_09930 0.83 +0.1
2,101,967 - -0.3
2,101,972 - +0.8
2,101,985 - -0.7
2,102,002 + +0.8
2,102,003 - -0.0
2,102,068 - -0.8
2,102,090 - -0.6
2,102,123 - -0.4
2,102,123 - -0.8
2,102,135 - +0.9
2,102,135 - -0.9
2,102,236 + IAI46_09935 0.33 -1.6
2,102,237 - IAI46_09935 0.34 -0.2
2,102,273 + IAI46_09935 0.44 +0.8
2,102,274 - IAI46_09935 0.44 -1.4
2,102,275 + IAI46_09935 0.44 +0.2
2,102,529 + +0.2
2,102,762 - -0.4
2,102,762 - +0.3
2,102,762 - +1.1
2,102,764 + -1.0
2,102,765 - -0.4
2,102,765 - -1.3
2,102,765 - -1.3
2,102,765 - +1.6
2,102,767 - -0.0
2,102,767 - -1.2
2,103,045 - -0.8
2,103,064 + -0.6
2,103,246 - -1.9
2,103,251 - +0.1
2,103,288 + -0.6
2,103,289 - +0.6
2,103,307 - +1.4
2,103,433 + -0.2
2,103,434 - +0.7
2,103,435 + -0.5
2,103,436 - +0.0
2,103,455 - -1.1
2,103,455 - -0.1

Or see this region's nucleotide sequence