Strain Fitness in Serratia liquefaciens MT49 around IAI46_09520

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09515 and IAI46_09520 are separated by 11 nucleotidesIAI46_09520 and IAI46_09525 are separated by 67 nucleotidesIAI46_09525 and IAI46_09530 overlap by 14 nucleotides IAI46_09515: IAI46_09515 - hypothetical protein, at 2,019,723 to 2,023,112 _09515 IAI46_09520: IAI46_09520 - membrane lipoprotein lipid attachment site-containing protein, at 2,023,124 to 2,023,819 _09520 IAI46_09525: IAI46_09525 - type II toxin-antitoxin system YafO family toxin, at 2,023,887 to 2,024,399 _09525 IAI46_09530: IAI46_09530 - hypothetical protein, at 2,024,386 to 2,024,700 _09530 Position (kb) 2023 2024Strain fitness (log2 ratio) -3 -2 -1 0 1at 2022.181 kb on + strand, within IAI46_09515at 2022.192 kb on + strand, within IAI46_09515at 2022.193 kb on - strand, within IAI46_09515at 2022.193 kb on - strand, within IAI46_09515at 2022.193 kb on - strand, within IAI46_09515at 2022.225 kb on - strand, within IAI46_09515at 2022.391 kb on + strand, within IAI46_09515at 2022.391 kb on + strand, within IAI46_09515at 2022.408 kb on - strand, within IAI46_09515at 2022.419 kb on + strand, within IAI46_09515at 2022.419 kb on + strand, within IAI46_09515at 2022.476 kb on + strand, within IAI46_09515at 2022.503 kb on - strand, within IAI46_09515at 2022.584 kb on - strand, within IAI46_09515at 2022.690 kb on + strand, within IAI46_09515at 2022.691 kb on - strand, within IAI46_09515at 2022.711 kb on - strand, within IAI46_09515at 2022.732 kb on + strand, within IAI46_09515at 2022.733 kb on - strand, within IAI46_09515at 2022.733 kb on - strand, within IAI46_09515at 2022.733 kb on - strand, within IAI46_09515at 2022.771 kb on + strand, within IAI46_09515at 2022.772 kb on - strand, within IAI46_09515at 2022.772 kb on - strand, within IAI46_09515at 2023.048 kb on + strandat 2023.072 kb on + strandat 2023.106 kb on + strandat 2023.135 kb on - strandat 2023.194 kb on - strand, within IAI46_09520at 2023.194 kb on - strand, within IAI46_09520at 2023.194 kb on - strand, within IAI46_09520at 2023.194 kb on - strand, within IAI46_09520at 2023.197 kb on + strand, within IAI46_09520at 2023.197 kb on + strand, within IAI46_09520at 2023.222 kb on + strand, within IAI46_09520at 2023.241 kb on + strand, within IAI46_09520at 2023.242 kb on - strand, within IAI46_09520at 2023.248 kb on + strand, within IAI46_09520at 2023.287 kb on + strand, within IAI46_09520at 2023.387 kb on - strand, within IAI46_09520at 2023.414 kb on + strand, within IAI46_09520at 2023.417 kb on + strand, within IAI46_09520at 2023.420 kb on + strand, within IAI46_09520at 2023.459 kb on + strand, within IAI46_09520at 2023.460 kb on - strand, within IAI46_09520at 2023.475 kb on + strand, within IAI46_09520at 2023.475 kb on + strand, within IAI46_09520at 2023.476 kb on - strand, within IAI46_09520at 2023.492 kb on + strand, within IAI46_09520at 2023.492 kb on + strand, within IAI46_09520at 2023.493 kb on - strand, within IAI46_09520at 2023.496 kb on + strand, within IAI46_09520at 2023.496 kb on + strand, within IAI46_09520at 2023.496 kb on + strand, within IAI46_09520at 2023.496 kb on + strand, within IAI46_09520at 2023.496 kb on + strand, within IAI46_09520at 2023.496 kb on + strand, within IAI46_09520at 2023.496 kb on + strand, within IAI46_09520at 2023.496 kb on + strand, within IAI46_09520at 2023.496 kb on + strand, within IAI46_09520at 2023.516 kb on + strand, within IAI46_09520at 2023.517 kb on - strand, within IAI46_09520at 2023.519 kb on + strand, within IAI46_09520at 2023.519 kb on + strand, within IAI46_09520at 2023.519 kb on + strand, within IAI46_09520at 2023.520 kb on - strand, within IAI46_09520at 2023.523 kb on - strand, within IAI46_09520at 2023.533 kb on - strand, within IAI46_09520at 2023.544 kb on + strand, within IAI46_09520at 2023.544 kb on + strand, within IAI46_09520at 2023.544 kb on + strand, within IAI46_09520at 2023.586 kb on + strand, within IAI46_09520at 2023.617 kb on - strand, within IAI46_09520at 2023.650 kb on + strand, within IAI46_09520at 2023.651 kb on - strand, within IAI46_09520at 2023.656 kb on + strand, within IAI46_09520at 2023.792 kb on + strandat 2023.808 kb on + strandat 2023.808 kb on + strandat 2023.820 kb on + strandat 2023.930 kb on - strandat 2023.969 kb on + strand, within IAI46_09525at 2023.989 kb on + strand, within IAI46_09525at 2023.994 kb on + strand, within IAI46_09525at 2024.089 kb on - strand, within IAI46_09525at 2024.089 kb on - strand, within IAI46_09525at 2024.093 kb on - strand, within IAI46_09525at 2024.093 kb on - strand, within IAI46_09525at 2024.100 kb on - strand, within IAI46_09525at 2024.181 kb on - strand, within IAI46_09525at 2024.211 kb on - strand, within IAI46_09525at 2024.382 kb on - strandat 2024.383 kb on + strandat 2024.384 kb on - strandat 2024.384 kb on - strandat 2024.384 kb on - strandat 2024.384 kb on - strandat 2024.384 kb on - strandat 2024.765 kb on - strandat 2024.765 kb on - strandat 2024.765 kb on - strandat 2024.790 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,022,181 + IAI46_09515 0.73 +0.6
2,022,192 + IAI46_09515 0.73 +0.5
2,022,193 - IAI46_09515 0.73 +0.5
2,022,193 - IAI46_09515 0.73 -0.2
2,022,193 - IAI46_09515 0.73 +1.5
2,022,225 - IAI46_09515 0.74 +0.9
2,022,391 + IAI46_09515 0.79 +0.1
2,022,391 + IAI46_09515 0.79 +0.4
2,022,408 - IAI46_09515 0.79 +0.9
2,022,419 + IAI46_09515 0.80 -0.7
2,022,419 + IAI46_09515 0.80 -0.5
2,022,476 + IAI46_09515 0.81 +1.6
2,022,503 - IAI46_09515 0.82 -0.0
2,022,584 - IAI46_09515 0.84 +0.0
2,022,690 + IAI46_09515 0.88 -0.2
2,022,691 - IAI46_09515 0.88 +1.0
2,022,711 - IAI46_09515 0.88 -0.5
2,022,732 + IAI46_09515 0.89 -0.4
2,022,733 - IAI46_09515 0.89 -3.0
2,022,733 - IAI46_09515 0.89 -1.0
2,022,733 - IAI46_09515 0.89 +0.6
2,022,771 + IAI46_09515 0.90 +1.6
2,022,772 - IAI46_09515 0.90 +0.5
2,022,772 - IAI46_09515 0.90 -0.5
2,023,048 + +0.5
2,023,072 + +0.2
2,023,106 + +0.4
2,023,135 - +0.3
2,023,194 - IAI46_09520 0.10 -0.5
2,023,194 - IAI46_09520 0.10 -0.8
2,023,194 - IAI46_09520 0.10 +0.3
2,023,194 - IAI46_09520 0.10 +0.2
2,023,197 + IAI46_09520 0.10 -0.3
2,023,197 + IAI46_09520 0.10 +0.8
2,023,222 + IAI46_09520 0.14 +0.8
2,023,241 + IAI46_09520 0.17 +0.0
2,023,242 - IAI46_09520 0.17 -0.2
2,023,248 + IAI46_09520 0.18 +0.9
2,023,287 + IAI46_09520 0.23 +1.0
2,023,387 - IAI46_09520 0.38 +1.2
2,023,414 + IAI46_09520 0.42 +0.7
2,023,417 + IAI46_09520 0.42 -0.1
2,023,420 + IAI46_09520 0.43 +1.3
2,023,459 + IAI46_09520 0.48 -0.4
2,023,460 - IAI46_09520 0.48 +0.3
2,023,475 + IAI46_09520 0.50 -0.4
2,023,475 + IAI46_09520 0.50 -0.1
2,023,476 - IAI46_09520 0.51 -0.3
2,023,492 + IAI46_09520 0.53 +1.0
2,023,492 + IAI46_09520 0.53 -0.1
2,023,493 - IAI46_09520 0.53 +0.7
2,023,496 + IAI46_09520 0.53 +1.1
2,023,496 + IAI46_09520 0.53 -0.5
2,023,496 + IAI46_09520 0.53 -0.3
2,023,496 + IAI46_09520 0.53 -0.9
2,023,496 + IAI46_09520 0.53 +0.3
2,023,496 + IAI46_09520 0.53 -0.0
2,023,496 + IAI46_09520 0.53 -0.2
2,023,496 + IAI46_09520 0.53 -0.1
2,023,496 + IAI46_09520 0.53 +0.4
2,023,516 + IAI46_09520 0.56 +0.2
2,023,517 - IAI46_09520 0.56 -0.5
2,023,519 + IAI46_09520 0.57 -0.8
2,023,519 + IAI46_09520 0.57 +0.6
2,023,519 + IAI46_09520 0.57 +0.3
2,023,520 - IAI46_09520 0.57 +0.2
2,023,523 - IAI46_09520 0.57 -0.2
2,023,533 - IAI46_09520 0.59 +1.1
2,023,544 + IAI46_09520 0.60 +0.4
2,023,544 + IAI46_09520 0.60 +0.2
2,023,544 + IAI46_09520 0.60 -0.7
2,023,586 + IAI46_09520 0.66 +0.3
2,023,617 - IAI46_09520 0.71 -0.5
2,023,650 + IAI46_09520 0.76 +0.2
2,023,651 - IAI46_09520 0.76 +0.9
2,023,656 + IAI46_09520 0.76 +0.5
2,023,792 + -0.1
2,023,808 + +0.0
2,023,808 + +1.5
2,023,820 + +0.3
2,023,930 - +0.2
2,023,969 + IAI46_09525 0.16 -0.5
2,023,989 + IAI46_09525 0.20 +0.3
2,023,994 + IAI46_09525 0.21 -0.0
2,024,089 - IAI46_09525 0.39 -0.4
2,024,089 - IAI46_09525 0.39 -0.4
2,024,093 - IAI46_09525 0.40 +0.5
2,024,093 - IAI46_09525 0.40 -1.1
2,024,100 - IAI46_09525 0.42 +0.6
2,024,181 - IAI46_09525 0.57 +0.2
2,024,211 - IAI46_09525 0.63 +0.4
2,024,382 - +0.1
2,024,383 + -1.8
2,024,384 - +0.5
2,024,384 - +0.9
2,024,384 - +0.5
2,024,384 - +0.2
2,024,384 - +0.6
2,024,765 - +0.8
2,024,765 - +0.6
2,024,765 - -0.7
2,024,790 - +0.6

Or see this region's nucleotide sequence