Strain Fitness in Serratia liquefaciens MT49 around IAI46_09350

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09340 and IAI46_09345 are separated by 424 nucleotidesIAI46_09345 and IAI46_09350 overlap by 4 nucleotidesIAI46_09350 and IAI46_09355 are separated by 150 nucleotidesIAI46_09355 and IAI46_09360 are separated by 350 nucleotides IAI46_09340: IAI46_09340 - hypothetical protein, at 1,995,031 to 1,996,074 _09340 IAI46_09345: IAI46_09345 - DNA polymerase III subunit theta, at 1,996,499 to 1,996,765 _09345 IAI46_09350: IAI46_09350 - helix-turn-helix transcriptional regulator, at 1,996,762 to 1,997,358 _09350 IAI46_09355: IAI46_09355 - hypothetical protein, at 1,997,509 to 1,997,727 _09355 IAI46_09360: IAI46_09360 - Pyocin large subunit, at 1,998,078 to 1,998,782 _09360 Position (kb) 1996 1997 1998Strain fitness (log2 ratio) -1 0 1at 1995.832 kb on - strand, within IAI46_09340at 1995.946 kb on + strand, within IAI46_09340at 1995.947 kb on - strand, within IAI46_09340at 1996.039 kb on - strandat 1996.047 kb on + strandat 1996.055 kb on - strandat 1996.283 kb on + strandat 1996.476 kb on - strandat 1996.500 kb on + strandat 1996.611 kb on - strand, within IAI46_09345at 1996.611 kb on - strand, within IAI46_09345at 1996.674 kb on + strand, within IAI46_09345at 1996.674 kb on + strand, within IAI46_09345at 1996.675 kb on - strand, within IAI46_09345at 1996.675 kb on - strand, within IAI46_09345at 1996.701 kb on - strand, within IAI46_09345at 1996.701 kb on - strand, within IAI46_09345at 1996.701 kb on - strand, within IAI46_09345at 1996.701 kb on - strand, within IAI46_09345at 1996.701 kb on - strand, within IAI46_09345at 1997.367 kb on - strandat 1997.470 kb on - strandat 1997.599 kb on + strand, within IAI46_09355at 1997.600 kb on - strand, within IAI46_09355at 1997.722 kb on + strandat 1997.840 kb on - strandat 1997.867 kb on + strandat 1997.867 kb on + strandat 1997.900 kb on + strandat 1997.923 kb on + strandat 1997.923 kb on + strandat 1997.924 kb on - strandat 1997.953 kb on + strandat 1997.954 kb on - strandat 1997.974 kb on - strandat 1998.185 kb on - strand, within IAI46_09360at 1998.185 kb on - strand, within IAI46_09360at 1998.185 kb on - strand, within IAI46_09360at 1998.305 kb on - strand, within IAI46_09360at 1998.305 kb on - strand, within IAI46_09360

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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1,995,832 - IAI46_09340 0.77 -0.3
1,995,946 + IAI46_09340 0.88 +1.4
1,995,947 - IAI46_09340 0.88 +0.5
1,996,039 - +1.2
1,996,047 + -0.4
1,996,055 - +1.5
1,996,283 + +0.5
1,996,476 - -0.3
1,996,500 + +0.5
1,996,611 - IAI46_09345 0.42 +0.3
1,996,611 - IAI46_09345 0.42 +0.8
1,996,674 + IAI46_09345 0.66 +0.5
1,996,674 + IAI46_09345 0.66 +0.6
1,996,675 - IAI46_09345 0.66 +0.4
1,996,675 - IAI46_09345 0.66 +0.7
1,996,701 - IAI46_09345 0.76 +0.3
1,996,701 - IAI46_09345 0.76 +0.3
1,996,701 - IAI46_09345 0.76 -1.6
1,996,701 - IAI46_09345 0.76 +0.4
1,996,701 - IAI46_09345 0.76 +0.1
1,997,367 - +0.2
1,997,470 - -0.0
1,997,599 + IAI46_09355 0.41 +0.2
1,997,600 - IAI46_09355 0.42 -0.8
1,997,722 + -0.6
1,997,840 - +0.1
1,997,867 + +0.8
1,997,867 + +0.2
1,997,900 + -0.3
1,997,923 + -0.1
1,997,923 + -1.0
1,997,924 - -0.8
1,997,953 + -0.2
1,997,954 - +0.2
1,997,974 - +0.8
1,998,185 - IAI46_09360 0.15 -1.7
1,998,185 - IAI46_09360 0.15 +1.1
1,998,185 - IAI46_09360 0.15 +0.5
1,998,305 - IAI46_09360 0.32 -0.1
1,998,305 - IAI46_09360 0.32 -0.4

Or see this region's nucleotide sequence