Strain Fitness in Serratia liquefaciens MT49 around IAI46_09035

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09025 and IAI46_09030 are separated by 66 nucleotidesIAI46_09030 and IAI46_09035 are separated by 14 nucleotidesIAI46_09035 and IAI46_09040 are separated by 17 nucleotidesIAI46_09040 and IAI46_09045 are separated by 46 nucleotides IAI46_09025: IAI46_09025 - pyrimidine utilization transport protein G, at 1,934,590 to 1,935,909 _09025 IAI46_09030: IAI46_09030 - pyrimidine utilization flavin reductase protein F, at 1,935,976 to 1,936,503 _09030 IAI46_09035: IAI46_09035 - pyrimidine utilization protein D, at 1,936,518 to 1,937,321 _09035 IAI46_09040: IAI46_09040 - pyrimidine utilization protein C, at 1,937,339 to 1,937,725 _09040 IAI46_09045: IAI46_09045 - pyrimidine utilization protein B, at 1,937,772 to 1,938,518 _09045 Position (kb) 1936 1937 1938Strain fitness (log2 ratio) -2 -1 0 1at 1935.543 kb on - strand, within IAI46_09025at 1935.900 kb on + strandat 1936.013 kb on + strandat 1936.161 kb on + strand, within IAI46_09030at 1936.161 kb on + strand, within IAI46_09030at 1936.162 kb on - strand, within IAI46_09030at 1936.162 kb on - strand, within IAI46_09030at 1936.248 kb on + strand, within IAI46_09030at 1936.248 kb on + strand, within IAI46_09030at 1936.249 kb on - strand, within IAI46_09030at 1936.249 kb on - strand, within IAI46_09030at 1936.249 kb on - strand, within IAI46_09030at 1936.395 kb on + strand, within IAI46_09030at 1936.396 kb on - strand, within IAI46_09030at 1936.401 kb on + strand, within IAI46_09030at 1936.402 kb on - strand, within IAI46_09030at 1936.503 kb on + strandat 1936.504 kb on - strandat 1936.621 kb on + strand, within IAI46_09035at 1936.622 kb on - strand, within IAI46_09035at 1936.622 kb on - strand, within IAI46_09035at 1936.840 kb on - strand, within IAI46_09035at 1936.903 kb on + strand, within IAI46_09035at 1936.904 kb on - strand, within IAI46_09035at 1936.904 kb on - strand, within IAI46_09035at 1936.922 kb on + strand, within IAI46_09035at 1936.922 kb on + strand, within IAI46_09035at 1937.138 kb on + strand, within IAI46_09035at 1937.139 kb on - strand, within IAI46_09035at 1937.179 kb on + strand, within IAI46_09035at 1937.180 kb on - strand, within IAI46_09035at 1937.318 kb on - strandat 1937.318 kb on - strandat 1937.448 kb on + strand, within IAI46_09040at 1937.448 kb on + strand, within IAI46_09040at 1937.469 kb on + strand, within IAI46_09040at 1937.470 kb on - strand, within IAI46_09040at 1937.470 kb on - strand, within IAI46_09040at 1937.500 kb on + strand, within IAI46_09040at 1937.500 kb on + strand, within IAI46_09040at 1937.605 kb on + strand, within IAI46_09040at 1937.606 kb on - strand, within IAI46_09040at 1937.640 kb on + strand, within IAI46_09040at 1937.640 kb on + strand, within IAI46_09040at 1937.641 kb on - strand, within IAI46_09040at 1937.641 kb on - strand, within IAI46_09040at 1937.641 kb on - strand, within IAI46_09040at 1937.758 kb on + strandat 1937.758 kb on + strandat 1937.858 kb on - strand, within IAI46_09045at 1938.230 kb on - strand, within IAI46_09045

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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1,935,543 - IAI46_09025 0.72 -0.4
1,935,900 + -0.1
1,936,013 + -0.6
1,936,161 + IAI46_09030 0.35 -0.5
1,936,161 + IAI46_09030 0.35 +0.2
1,936,162 - IAI46_09030 0.35 +0.7
1,936,162 - IAI46_09030 0.35 -0.4
1,936,248 + IAI46_09030 0.52 +0.6
1,936,248 + IAI46_09030 0.52 +0.0
1,936,249 - IAI46_09030 0.52 +0.5
1,936,249 - IAI46_09030 0.52 -0.5
1,936,249 - IAI46_09030 0.52 +0.1
1,936,395 + IAI46_09030 0.79 +0.4
1,936,396 - IAI46_09030 0.80 -0.2
1,936,401 + IAI46_09030 0.80 -0.8
1,936,402 - IAI46_09030 0.81 -0.2
1,936,503 + +0.1
1,936,504 - -0.3
1,936,621 + IAI46_09035 0.13 +0.8
1,936,622 - IAI46_09035 0.13 +0.1
1,936,622 - IAI46_09035 0.13 -0.6
1,936,840 - IAI46_09035 0.40 -1.1
1,936,903 + IAI46_09035 0.48 -0.4
1,936,904 - IAI46_09035 0.48 +0.6
1,936,904 - IAI46_09035 0.48 -0.3
1,936,922 + IAI46_09035 0.50 -0.5
1,936,922 + IAI46_09035 0.50 -0.4
1,937,138 + IAI46_09035 0.77 +0.7
1,937,139 - IAI46_09035 0.77 +0.4
1,937,179 + IAI46_09035 0.82 -0.6
1,937,180 - IAI46_09035 0.82 -0.4
1,937,318 - +0.5
1,937,318 - +0.4
1,937,448 + IAI46_09040 0.28 +0.3
1,937,448 + IAI46_09040 0.28 +1.3
1,937,469 + IAI46_09040 0.34 -0.2
1,937,470 - IAI46_09040 0.34 +0.6
1,937,470 - IAI46_09040 0.34 +0.7
1,937,500 + IAI46_09040 0.42 -0.5
1,937,500 + IAI46_09040 0.42 -0.8
1,937,605 + IAI46_09040 0.69 +0.1
1,937,606 - IAI46_09040 0.69 +0.6
1,937,640 + IAI46_09040 0.78 +1.4
1,937,640 + IAI46_09040 0.78 -0.4
1,937,641 - IAI46_09040 0.78 +0.2
1,937,641 - IAI46_09040 0.78 +0.1
1,937,641 - IAI46_09040 0.78 -1.4
1,937,758 + +1.3
1,937,758 + -0.7
1,937,858 - IAI46_09045 0.12 -1.1
1,938,230 - IAI46_09045 0.61 -2.1

Or see this region's nucleotide sequence