Strain Fitness in Serratia liquefaciens MT49 around IAI46_08760

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08755 and IAI46_08760 are separated by 306 nucleotidesIAI46_08760 and IAI46_08765 are separated by 226 nucleotides IAI46_08755: IAI46_08755 - porin OmpC, at 1,875,183 to 1,876,289 _08755 IAI46_08760: IAI46_08760 - asparagine--tRNA ligase, at 1,876,596 to 1,877,996 _08760 IAI46_08765: IAI46_08765 - nicotinate phosphoribosyltransferase, at 1,878,223 to 1,879,428 _08765 Position (kb) 1876 1877 1878Strain fitness (log2 ratio) -1 0 1 2at 1875.645 kb on - strand, within IAI46_08755at 1875.662 kb on - strand, within IAI46_08755at 1875.698 kb on - strand, within IAI46_08755at 1875.698 kb on - strand, within IAI46_08755at 1875.698 kb on - strand, within IAI46_08755at 1875.698 kb on - strand, within IAI46_08755at 1875.773 kb on - strand, within IAI46_08755at 1875.827 kb on - strand, within IAI46_08755at 1875.827 kb on - strand, within IAI46_08755at 1875.872 kb on - strand, within IAI46_08755at 1875.875 kb on + strand, within IAI46_08755at 1875.875 kb on + strand, within IAI46_08755at 1875.875 kb on + strand, within IAI46_08755at 1875.876 kb on - strand, within IAI46_08755at 1875.876 kb on - strand, within IAI46_08755at 1875.876 kb on - strand, within IAI46_08755at 1875.876 kb on - strand, within IAI46_08755at 1875.877 kb on + strand, within IAI46_08755at 1875.877 kb on + strand, within IAI46_08755at 1875.878 kb on - strand, within IAI46_08755at 1875.878 kb on - strand, within IAI46_08755at 1875.878 kb on - strand, within IAI46_08755at 1875.878 kb on - strand, within IAI46_08755at 1875.878 kb on - strand, within IAI46_08755at 1875.878 kb on - strand, within IAI46_08755at 1875.878 kb on - strand, within IAI46_08755at 1875.878 kb on - strand, within IAI46_08755at 1875.882 kb on - strand, within IAI46_08755at 1875.882 kb on - strand, within IAI46_08755at 1875.905 kb on + strand, within IAI46_08755at 1875.906 kb on - strand, within IAI46_08755at 1875.906 kb on - strand, within IAI46_08755at 1875.922 kb on - strand, within IAI46_08755at 1875.922 kb on - strand, within IAI46_08755at 1875.928 kb on + strand, within IAI46_08755at 1875.929 kb on - strand, within IAI46_08755at 1875.940 kb on + strand, within IAI46_08755at 1875.940 kb on + strand, within IAI46_08755at 1876.124 kb on - strand, within IAI46_08755at 1876.124 kb on - strand, within IAI46_08755at 1876.163 kb on - strand, within IAI46_08755at 1876.294 kb on - strandat 1876.294 kb on - strandat 1876.294 kb on - strandat 1876.294 kb on - strandat 1876.294 kb on - strandat 1876.295 kb on + strandat 1876.295 kb on + strandat 1876.296 kb on - strandat 1876.296 kb on - strandat 1876.296 kb on - strandat 1876.296 kb on - strandat 1876.358 kb on - strandat 1876.423 kb on - strandat 1876.447 kb on + strandat 1876.448 kb on - strandat 1876.485 kb on + strandat 1876.486 kb on - strandat 1876.542 kb on - strandat 1876.542 kb on - strandat 1876.565 kb on - strandat 1876.565 kb on - strandat 1876.573 kb on + strandat 1876.582 kb on + strandat 1876.586 kb on - strandat 1876.598 kb on - strandat 1878.034 kb on - strandat 1878.061 kb on - strandat 1878.157 kb on - strandat 1878.159 kb on - strandat 1878.224 kb on + strandat 1878.248 kb on - strandat 1878.324 kb on + strandat 1878.408 kb on + strand, within IAI46_08765at 1878.408 kb on + strand, within IAI46_08765at 1878.408 kb on + strand, within IAI46_08765at 1878.409 kb on - strand, within IAI46_08765at 1878.597 kb on - strand, within IAI46_08765at 1878.597 kb on - strand, within IAI46_08765at 1878.778 kb on - strand, within IAI46_08765at 1878.815 kb on + strand, within IAI46_08765at 1878.816 kb on - strand, within IAI46_08765at 1878.816 kb on - strand, within IAI46_08765

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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1,875,645 - IAI46_08755 0.42 -0.1
1,875,662 - IAI46_08755 0.43 -0.0
1,875,698 - IAI46_08755 0.47 +0.4
1,875,698 - IAI46_08755 0.47 -0.0
1,875,698 - IAI46_08755 0.47 -0.6
1,875,698 - IAI46_08755 0.47 +0.9
1,875,773 - IAI46_08755 0.53 -0.5
1,875,827 - IAI46_08755 0.58 +0.3
1,875,827 - IAI46_08755 0.58 -0.6
1,875,872 - IAI46_08755 0.62 -0.7
1,875,875 + IAI46_08755 0.63 +0.3
1,875,875 + IAI46_08755 0.63 +0.6
1,875,875 + IAI46_08755 0.63 +0.6
1,875,876 - IAI46_08755 0.63 -0.9
1,875,876 - IAI46_08755 0.63 +0.8
1,875,876 - IAI46_08755 0.63 +0.6
1,875,876 - IAI46_08755 0.63 -0.7
1,875,877 + IAI46_08755 0.63 +0.4
1,875,877 + IAI46_08755 0.63 -0.4
1,875,878 - IAI46_08755 0.63 +1.0
1,875,878 - IAI46_08755 0.63 +0.5
1,875,878 - IAI46_08755 0.63 -0.4
1,875,878 - IAI46_08755 0.63 -0.7
1,875,878 - IAI46_08755 0.63 +0.6
1,875,878 - IAI46_08755 0.63 +0.6
1,875,878 - IAI46_08755 0.63 -0.0
1,875,878 - IAI46_08755 0.63 +1.6
1,875,882 - IAI46_08755 0.63 -0.0
1,875,882 - IAI46_08755 0.63 -0.4
1,875,905 + IAI46_08755 0.65 -0.3
1,875,906 - IAI46_08755 0.65 +0.6
1,875,906 - IAI46_08755 0.65 -1.5
1,875,922 - IAI46_08755 0.67 -0.5
1,875,922 - IAI46_08755 0.67 +0.4
1,875,928 + IAI46_08755 0.67 +0.3
1,875,929 - IAI46_08755 0.67 +0.8
1,875,940 + IAI46_08755 0.68 +0.0
1,875,940 + IAI46_08755 0.68 -0.5
1,876,124 - IAI46_08755 0.85 -0.4
1,876,124 - IAI46_08755 0.85 -0.2
1,876,163 - IAI46_08755 0.89 +0.5
1,876,294 - +1.0
1,876,294 - +0.4
1,876,294 - +0.9
1,876,294 - -0.0
1,876,294 - -0.1
1,876,295 + +0.1
1,876,295 + +0.4
1,876,296 - -0.7
1,876,296 - -0.9
1,876,296 - -0.4
1,876,296 - +0.1
1,876,358 - +1.1
1,876,423 - -0.2
1,876,447 + -0.7
1,876,448 - -0.7
1,876,485 + +0.3
1,876,486 - +0.1
1,876,542 - -0.2
1,876,542 - -1.0
1,876,565 - -0.2
1,876,565 - +0.0
1,876,573 + -0.4
1,876,582 + +0.4
1,876,586 - +0.1
1,876,598 - +1.8
1,878,034 - +1.0
1,878,061 - +0.9
1,878,157 - +0.8
1,878,159 - +0.2
1,878,224 + +0.4
1,878,248 - +0.4
1,878,324 + +0.5
1,878,408 + IAI46_08765 0.15 -0.2
1,878,408 + IAI46_08765 0.15 +0.5
1,878,408 + IAI46_08765 0.15 +0.8
1,878,409 - IAI46_08765 0.15 -0.3
1,878,597 - IAI46_08765 0.31 -0.1
1,878,597 - IAI46_08765 0.31 +0.5
1,878,778 - IAI46_08765 0.46 +0.2
1,878,815 + IAI46_08765 0.49 -1.0
1,878,816 - IAI46_08765 0.49 +0.5
1,878,816 - IAI46_08765 0.49 +0.1

Or see this region's nucleotide sequence