Strain Fitness in Serratia liquefaciens MT49 around IAI46_08135

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08125 and IAI46_08130 overlap by 1 nucleotidesIAI46_08130 and IAI46_08135 are separated by 31 nucleotidesIAI46_08135 and IAI46_08140 are separated by 7 nucleotides IAI46_08125: IAI46_08125 - ABC transporter permease, at 1,727,860 to 1,728,627 _08125 IAI46_08130: IAI46_08130 - ABC transporter ATP-binding protein, at 1,728,627 to 1,729,367 _08130 IAI46_08135: IAI46_08135 - DUF4422 domain-containing protein, at 1,729,399 to 1,731,297 _08135 IAI46_08140: IAI46_08140 - UDP-galactopyranose mutase, at 1,731,305 to 1,732,459 _08140 Position (kb) 1729 1730 1731 1732Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1728.625 kb on + strandat 1728.809 kb on + strand, within IAI46_08130at 1728.863 kb on - strand, within IAI46_08130at 1728.983 kb on - strand, within IAI46_08130at 1729.138 kb on + strand, within IAI46_08130at 1729.472 kb on + strandat 1729.837 kb on + strand, within IAI46_08135at 1730.555 kb on + strand, within IAI46_08135at 1730.698 kb on + strand, within IAI46_08135at 1730.859 kb on + strand, within IAI46_08135at 1730.859 kb on + strand, within IAI46_08135at 1730.948 kb on + strand, within IAI46_08135at 1731.062 kb on - strand, within IAI46_08135at 1731.103 kb on + strand, within IAI46_08135at 1731.128 kb on + strandat 1731.159 kb on + strandat 1731.214 kb on - strandat 1731.265 kb on + strandat 1731.469 kb on + strand, within IAI46_08140at 1731.469 kb on + strand, within IAI46_08140at 1731.469 kb on + strand, within IAI46_08140at 1731.470 kb on - strand, within IAI46_08140at 1731.473 kb on + strand, within IAI46_08140at 1731.473 kb on + strand, within IAI46_08140at 1731.474 kb on - strand, within IAI46_08140at 1731.530 kb on + strand, within IAI46_08140at 1731.548 kb on + strand, within IAI46_08140at 1731.548 kb on + strand, within IAI46_08140at 1731.610 kb on + strand, within IAI46_08140at 1731.610 kb on + strand, within IAI46_08140at 1731.664 kb on - strand, within IAI46_08140at 1731.691 kb on + strand, within IAI46_08140at 1731.768 kb on - strand, within IAI46_08140at 1731.768 kb on - strand, within IAI46_08140at 1731.769 kb on + strand, within IAI46_08140at 1731.769 kb on + strand, within IAI46_08140at 1731.769 kb on + strand, within IAI46_08140at 1731.769 kb on + strand, within IAI46_08140at 1731.853 kb on + strand, within IAI46_08140at 1731.857 kb on + strand, within IAI46_08140at 1731.896 kb on + strand, within IAI46_08140at 1731.921 kb on + strand, within IAI46_08140at 1731.942 kb on + strand, within IAI46_08140at 1731.954 kb on + strand, within IAI46_08140at 1731.983 kb on + strand, within IAI46_08140at 1731.983 kb on + strand, within IAI46_08140at 1731.983 kb on + strand, within IAI46_08140at 1732.054 kb on + strand, within IAI46_08140at 1732.115 kb on + strand, within IAI46_08140at 1732.241 kb on + strand, within IAI46_08140at 1732.242 kb on - strand, within IAI46_08140at 1732.244 kb on + strand, within IAI46_08140

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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1,728,625 + +1.7
1,728,809 + IAI46_08130 0.25 +0.4
1,728,863 - IAI46_08130 0.32 +0.0
1,728,983 - IAI46_08130 0.48 +0.0
1,729,138 + IAI46_08130 0.69 +0.4
1,729,472 + -0.1
1,729,837 + IAI46_08135 0.23 +1.7
1,730,555 + IAI46_08135 0.61 -2.9
1,730,698 + IAI46_08135 0.68 -0.5
1,730,859 + IAI46_08135 0.77 +0.4
1,730,859 + IAI46_08135 0.77 +0.8
1,730,948 + IAI46_08135 0.82 -0.4
1,731,062 - IAI46_08135 0.88 -0.8
1,731,103 + IAI46_08135 0.90 +0.0
1,731,128 + -1.4
1,731,159 + +0.3
1,731,214 - -1.8
1,731,265 + -1.1
1,731,469 + IAI46_08140 0.14 +0.7
1,731,469 + IAI46_08140 0.14 -0.7
1,731,469 + IAI46_08140 0.14 -0.3
1,731,470 - IAI46_08140 0.14 -0.3
1,731,473 + IAI46_08140 0.15 +0.1
1,731,473 + IAI46_08140 0.15 -0.2
1,731,474 - IAI46_08140 0.15 -0.5
1,731,530 + IAI46_08140 0.19 +0.7
1,731,548 + IAI46_08140 0.21 -0.2
1,731,548 + IAI46_08140 0.21 -0.8
1,731,610 + IAI46_08140 0.26 +0.5
1,731,610 + IAI46_08140 0.26 -1.1
1,731,664 - IAI46_08140 0.31 +0.4
1,731,691 + IAI46_08140 0.33 +0.8
1,731,768 - IAI46_08140 0.40 -1.1
1,731,768 - IAI46_08140 0.40 -2.2
1,731,769 + IAI46_08140 0.40 +0.4
1,731,769 + IAI46_08140 0.40 +0.1
1,731,769 + IAI46_08140 0.40 -1.4
1,731,769 + IAI46_08140 0.40 -0.3
1,731,853 + IAI46_08140 0.47 -0.1
1,731,857 + IAI46_08140 0.48 +1.9
1,731,896 + IAI46_08140 0.51 +1.5
1,731,921 + IAI46_08140 0.53 -0.5
1,731,942 + IAI46_08140 0.55 -1.0
1,731,954 + IAI46_08140 0.56 +0.0
1,731,983 + IAI46_08140 0.59 +0.9
1,731,983 + IAI46_08140 0.59 +1.1
1,731,983 + IAI46_08140 0.59 -2.5
1,732,054 + IAI46_08140 0.65 +1.1
1,732,115 + IAI46_08140 0.70 +0.5
1,732,241 + IAI46_08140 0.81 +0.4
1,732,242 - IAI46_08140 0.81 -0.1
1,732,244 + IAI46_08140 0.81 -0.1

Or see this region's nucleotide sequence