Strain Fitness in Serratia liquefaciens MT49 around IAI46_07365

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07360 and IAI46_07365 are separated by 29 nucleotidesIAI46_07365 and IAI46_07370 are separated by 73 nucleotides IAI46_07360: IAI46_07360 - fatty acid desaturase, at 1,557,793 to 1,558,860 _07360 IAI46_07365: IAI46_07365 - ABC transporter substrate-binding protein, at 1,558,890 to 1,559,822 _07365 IAI46_07370: IAI46_07370 - ABC transporter permease, at 1,559,896 to 1,561,056 _07370 Position (kb) 1558 1559 1560Strain fitness (log2 ratio) -2 -1 0 1at 1558.004 kb on - strand, within IAI46_07360at 1558.005 kb on + strand, within IAI46_07360at 1558.005 kb on + strand, within IAI46_07360at 1558.005 kb on + strand, within IAI46_07360at 1558.005 kb on + strand, within IAI46_07360at 1558.006 kb on - strand, within IAI46_07360at 1558.006 kb on - strand, within IAI46_07360at 1558.006 kb on - strand, within IAI46_07360at 1558.006 kb on - strand, within IAI46_07360at 1558.006 kb on - strand, within IAI46_07360at 1558.006 kb on - strand, within IAI46_07360at 1558.006 kb on - strand, within IAI46_07360at 1558.006 kb on - strand, within IAI46_07360at 1558.006 kb on - strand, within IAI46_07360at 1558.006 kb on - strand, within IAI46_07360at 1558.112 kb on - strand, within IAI46_07360at 1558.125 kb on + strand, within IAI46_07360at 1558.183 kb on + strand, within IAI46_07360at 1558.249 kb on - strand, within IAI46_07360at 1558.255 kb on - strand, within IAI46_07360at 1558.305 kb on + strand, within IAI46_07360at 1558.426 kb on + strand, within IAI46_07360at 1558.426 kb on + strand, within IAI46_07360at 1558.427 kb on - strand, within IAI46_07360at 1558.469 kb on + strand, within IAI46_07360at 1558.518 kb on + strand, within IAI46_07360at 1558.518 kb on + strand, within IAI46_07360at 1558.519 kb on - strand, within IAI46_07360at 1558.519 kb on - strand, within IAI46_07360at 1558.521 kb on + strand, within IAI46_07360at 1558.521 kb on + strand, within IAI46_07360at 1558.522 kb on - strand, within IAI46_07360at 1558.525 kb on - strand, within IAI46_07360at 1558.571 kb on - strand, within IAI46_07360at 1558.577 kb on + strand, within IAI46_07360at 1558.578 kb on - strand, within IAI46_07360at 1558.578 kb on - strand, within IAI46_07360at 1558.578 kb on - strand, within IAI46_07360at 1558.609 kb on + strand, within IAI46_07360at 1558.617 kb on - strand, within IAI46_07360at 1558.648 kb on + strand, within IAI46_07360at 1558.649 kb on - strand, within IAI46_07360at 1558.713 kb on + strand, within IAI46_07360at 1558.858 kb on + strandat 1558.906 kb on + strandat 1558.906 kb on + strandat 1558.907 kb on - strandat 1558.907 kb on - strandat 1558.907 kb on - strandat 1558.907 kb on - strandat 1558.940 kb on - strandat 1559.136 kb on + strand, within IAI46_07365at 1559.146 kb on - strand, within IAI46_07365at 1559.146 kb on - strand, within IAI46_07365at 1559.286 kb on - strand, within IAI46_07365at 1559.294 kb on + strand, within IAI46_07365at 1559.294 kb on + strand, within IAI46_07365at 1559.294 kb on + strand, within IAI46_07365at 1559.295 kb on - strand, within IAI46_07365at 1559.295 kb on - strand, within IAI46_07365at 1559.453 kb on + strand, within IAI46_07365at 1559.510 kb on + strand, within IAI46_07365at 1559.557 kb on - strand, within IAI46_07365at 1559.876 kb on + strandat 1559.902 kb on - strandat 1559.921 kb on + strandat 1559.924 kb on + strandat 1559.925 kb on - strandat 1559.981 kb on - strandat 1560.053 kb on + strand, within IAI46_07370at 1560.216 kb on + strand, within IAI46_07370at 1560.322 kb on - strand, within IAI46_07370at 1560.397 kb on + strand, within IAI46_07370at 1560.401 kb on - strand, within IAI46_07370at 1560.401 kb on - strand, within IAI46_07370at 1560.448 kb on - strand, within IAI46_07370at 1560.448 kb on - strand, within IAI46_07370at 1560.448 kb on - strand, within IAI46_07370at 1560.694 kb on + strand, within IAI46_07370at 1560.695 kb on - strand, within IAI46_07370at 1560.695 kb on - strand, within IAI46_07370

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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1,558,004 - IAI46_07360 0.20 -0.2
1,558,005 + IAI46_07360 0.20 +0.3
1,558,005 + IAI46_07360 0.20 +0.2
1,558,005 + IAI46_07360 0.20 -1.4
1,558,005 + IAI46_07360 0.20 +0.1
1,558,006 - IAI46_07360 0.20 -0.5
1,558,006 - IAI46_07360 0.20 +0.7
1,558,006 - IAI46_07360 0.20 -0.1
1,558,006 - IAI46_07360 0.20 -1.3
1,558,006 - IAI46_07360 0.20 +0.6
1,558,006 - IAI46_07360 0.20 -0.2
1,558,006 - IAI46_07360 0.20 +0.1
1,558,006 - IAI46_07360 0.20 +0.3
1,558,006 - IAI46_07360 0.20 +0.3
1,558,006 - IAI46_07360 0.20 -0.5
1,558,112 - IAI46_07360 0.30 -0.5
1,558,125 + IAI46_07360 0.31 +0.2
1,558,183 + IAI46_07360 0.37 +1.3
1,558,249 - IAI46_07360 0.43 +1.2
1,558,255 - IAI46_07360 0.43 +0.4
1,558,305 + IAI46_07360 0.48 +1.0
1,558,426 + IAI46_07360 0.59 +1.6
1,558,426 + IAI46_07360 0.59 +0.2
1,558,427 - IAI46_07360 0.59 -0.2
1,558,469 + IAI46_07360 0.63 +0.2
1,558,518 + IAI46_07360 0.68 -0.3
1,558,518 + IAI46_07360 0.68 -0.6
1,558,519 - IAI46_07360 0.68 +0.2
1,558,519 - IAI46_07360 0.68 -0.3
1,558,521 + IAI46_07360 0.68 -0.1
1,558,521 + IAI46_07360 0.68 -0.0
1,558,522 - IAI46_07360 0.68 -0.5
1,558,525 - IAI46_07360 0.69 +0.0
1,558,571 - IAI46_07360 0.73 +0.2
1,558,577 + IAI46_07360 0.73 +0.4
1,558,578 - IAI46_07360 0.74 +0.1
1,558,578 - IAI46_07360 0.74 -0.3
1,558,578 - IAI46_07360 0.74 +0.3
1,558,609 + IAI46_07360 0.76 +1.0
1,558,617 - IAI46_07360 0.77 +0.6
1,558,648 + IAI46_07360 0.80 +0.6
1,558,649 - IAI46_07360 0.80 +0.5
1,558,713 + IAI46_07360 0.86 +0.8
1,558,858 + +0.1
1,558,906 + +0.5
1,558,906 + +0.9
1,558,907 - -0.5
1,558,907 - -0.2
1,558,907 - -0.3
1,558,907 - -0.6
1,558,940 - +0.5
1,559,136 + IAI46_07365 0.26 +0.3
1,559,146 - IAI46_07365 0.27 +0.0
1,559,146 - IAI46_07365 0.27 -0.8
1,559,286 - IAI46_07365 0.42 -0.1
1,559,294 + IAI46_07365 0.43 +0.2
1,559,294 + IAI46_07365 0.43 +0.5
1,559,294 + IAI46_07365 0.43 +0.0
1,559,295 - IAI46_07365 0.43 +1.1
1,559,295 - IAI46_07365 0.43 -0.3
1,559,453 + IAI46_07365 0.60 -0.6
1,559,510 + IAI46_07365 0.66 +0.1
1,559,557 - IAI46_07365 0.71 -0.1
1,559,876 + +0.9
1,559,902 - -0.1
1,559,921 + -0.3
1,559,924 + +0.6
1,559,925 - +0.5
1,559,981 - -0.7
1,560,053 + IAI46_07370 0.14 +0.1
1,560,216 + IAI46_07370 0.28 -2.1
1,560,322 - IAI46_07370 0.37 +1.3
1,560,397 + IAI46_07370 0.43 +0.3
1,560,401 - IAI46_07370 0.43 -0.3
1,560,401 - IAI46_07370 0.43 -0.2
1,560,448 - IAI46_07370 0.48 +0.6
1,560,448 - IAI46_07370 0.48 -0.3
1,560,448 - IAI46_07370 0.48 +0.0
1,560,694 + IAI46_07370 0.69 -0.1
1,560,695 - IAI46_07370 0.69 +0.4
1,560,695 - IAI46_07370 0.69 -0.2

Or see this region's nucleotide sequence