Strain Fitness in Serratia liquefaciens MT49 around IAI46_06565

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06560 and IAI46_06565 are separated by 389 nucleotidesIAI46_06565 and IAI46_06570 are separated by 149 nucleotidesIAI46_06570 and IAI46_06575 are separated by 5 nucleotides IAI46_06560: IAI46_06560 - uridine diphosphate-N-acetylglucosamine-binding protein YvcK, at 1,398,310 to 1,399,227 _06560 IAI46_06565: IAI46_06565 - GTP 3',8-cyclase MoaA, at 1,399,617 to 1,400,603 _06565 IAI46_06570: IAI46_06570 - molybdenum cofactor biosynthesis protein B, at 1,400,753 to 1,401,265 _06570 IAI46_06575: IAI46_06575 - cyclic pyranopterin monophosphate synthase MoaC, at 1,401,271 to 1,401,750 _06575 Position (kb) 1399 1400 1401Strain fitness (log2 ratio) -2 -1 0 1 2at 1398.690 kb on + strand, within IAI46_06560at 1398.901 kb on + strand, within IAI46_06560at 1398.902 kb on - strand, within IAI46_06560at 1399.117 kb on - strand, within IAI46_06560at 1399.135 kb on + strand, within IAI46_06560at 1399.136 kb on - strandat 1399.136 kb on - strandat 1399.136 kb on - strandat 1399.183 kb on + strandat 1399.237 kb on + strandat 1399.238 kb on - strandat 1399.249 kb on + strandat 1399.261 kb on + strandat 1399.343 kb on + strandat 1399.344 kb on - strandat 1399.361 kb on + strandat 1399.361 kb on + strandat 1399.394 kb on - strandat 1399.504 kb on + strandat 1399.504 kb on + strandat 1399.504 kb on + strandat 1399.518 kb on - strandat 1399.537 kb on + strandat 1399.538 kb on - strandat 1399.660 kb on - strandat 1399.705 kb on - strandat 1400.183 kb on + strand, within IAI46_06565at 1400.368 kb on - strand, within IAI46_06565at 1400.425 kb on + strand, within IAI46_06565at 1400.426 kb on - strand, within IAI46_06565at 1400.426 kb on - strand, within IAI46_06565at 1400.531 kb on + strandat 1400.561 kb on + strandat 1400.661 kb on + strandat 1400.662 kb on - strandat 1400.662 kb on - strandat 1400.701 kb on - strandat 1400.719 kb on - strandat 1400.730 kb on + strandat 1400.730 kb on + strandat 1400.731 kb on - strandat 1400.736 kb on + strandat 1400.736 kb on + strandat 1400.737 kb on - strandat 1400.737 kb on - strandat 1400.755 kb on - strandat 1400.784 kb on + strandat 1400.788 kb on + strandat 1400.916 kb on - strand, within IAI46_06570at 1401.009 kb on - strand, within IAI46_06570at 1401.083 kb on + strand, within IAI46_06570at 1401.083 kb on + strand, within IAI46_06570at 1401.084 kb on - strand, within IAI46_06570at 1401.084 kb on - strand, within IAI46_06570at 1401.203 kb on - strand, within IAI46_06570at 1401.312 kb on + strandat 1401.312 kb on + strandat 1401.313 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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1,398,690 + IAI46_06560 0.41 -0.4
1,398,901 + IAI46_06560 0.64 +1.2
1,398,902 - IAI46_06560 0.64 +0.3
1,399,117 - IAI46_06560 0.88 +0.9
1,399,135 + IAI46_06560 0.90 -0.9
1,399,136 - -0.3
1,399,136 - +0.4
1,399,136 - -0.2
1,399,183 + -0.2
1,399,237 + +0.2
1,399,238 - +0.1
1,399,249 + +1.0
1,399,261 + -0.4
1,399,343 + -0.3
1,399,344 - -0.1
1,399,361 + +0.6
1,399,361 + +0.2
1,399,394 - -2.7
1,399,504 + +0.4
1,399,504 + +0.1
1,399,504 + -1.1
1,399,518 - -0.5
1,399,537 + +1.1
1,399,538 - +1.6
1,399,660 - -0.3
1,399,705 - +0.6
1,400,183 + IAI46_06565 0.57 +0.2
1,400,368 - IAI46_06565 0.76 +0.4
1,400,425 + IAI46_06565 0.82 +1.9
1,400,426 - IAI46_06565 0.82 +0.2
1,400,426 - IAI46_06565 0.82 +0.4
1,400,531 + +0.2
1,400,561 + +0.9
1,400,661 + -0.1
1,400,662 - +0.3
1,400,662 - +1.0
1,400,701 - -0.0
1,400,719 - +0.4
1,400,730 + -0.1
1,400,730 + +0.2
1,400,731 - +0.2
1,400,736 + -0.9
1,400,736 + +1.3
1,400,737 - -0.5
1,400,737 - +0.1
1,400,755 - +0.0
1,400,784 + -0.1
1,400,788 + +0.2
1,400,916 - IAI46_06570 0.32 +0.6
1,401,009 - IAI46_06570 0.50 +0.0
1,401,083 + IAI46_06570 0.64 +0.5
1,401,083 + IAI46_06570 0.64 -0.2
1,401,084 - IAI46_06570 0.65 +0.2
1,401,084 - IAI46_06570 0.65 +0.4
1,401,203 - IAI46_06570 0.88 +0.5
1,401,312 + -0.1
1,401,312 + +0.3
1,401,313 - -0.6

Or see this region's nucleotide sequence