Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_05515 and IAI46_05520 are separated by 316 nucleotides IAI46_05520 and IAI46_05525 are separated by 362 nucleotides
IAI46_05515: IAI46_05515 - fimbrial protein, at 1,188,387 to 1,188,899
_05515
IAI46_05520: IAI46_05520 - transposase, at 1,189,216 to 1,189,341
_05520
IAI46_05525: IAI46_05525 - hypothetical protein, at 1,189,704 to 1,190,327
_05525
Position (kb)
1188
1189 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1187.398 kb on + strand at 1187.398 kb on + strand at 1187.433 kb on + strand at 1187.447 kb on + strand at 1187.447 kb on + strand at 1187.504 kb on + strand at 1187.511 kb on + strand at 1187.512 kb on - strand at 1187.530 kb on + strand at 1187.533 kb on + strand at 1187.533 kb on + strand at 1187.571 kb on - strand at 1187.575 kb on - strand at 1187.575 kb on - strand at 1187.575 kb on - strand at 1187.576 kb on + strand at 1187.577 kb on - strand at 1187.577 kb on - strand at 1187.581 kb on - strand at 1187.590 kb on + strand at 1187.590 kb on + strand at 1187.590 kb on + strand at 1187.590 kb on + strand at 1187.591 kb on - strand at 1187.593 kb on + strand at 1187.593 kb on + strand at 1187.594 kb on - strand at 1187.594 kb on - strand at 1187.594 kb on - strand at 1187.594 kb on - strand at 1187.594 kb on - strand at 1187.598 kb on + strand at 1187.599 kb on - strand at 1187.599 kb on - strand at 1187.606 kb on + strand at 1187.607 kb on - strand at 1187.612 kb on - strand at 1187.612 kb on - strand at 1187.659 kb on + strand at 1187.660 kb on - strand at 1187.663 kb on - strand at 1187.673 kb on - strand at 1187.723 kb on + strand at 1187.724 kb on - strand at 1187.726 kb on + strand at 1187.726 kb on + strand at 1187.729 kb on + strand at 1187.742 kb on - strand at 1187.771 kb on - strand at 1187.805 kb on + strand at 1187.855 kb on - strand at 1187.858 kb on + strand at 1187.930 kb on + strand at 1187.930 kb on + strand at 1187.967 kb on + strand at 1187.970 kb on + strand at 1187.970 kb on + strand at 1187.971 kb on - strand at 1188.061 kb on + strand at 1188.091 kb on + strand at 1188.229 kb on + strand at 1188.271 kb on + strand at 1188.298 kb on + strand at 1188.298 kb on + strand at 1188.418 kb on + strand at 1188.525 kb on - strand, within IAI46_05515 at 1188.598 kb on - strand, within IAI46_05515 at 1188.788 kb on + strand, within IAI46_05515 at 1188.909 kb on + strand at 1188.937 kb on + strand at 1188.945 kb on + strand at 1188.946 kb on - strand at 1189.041 kb on - strand at 1189.049 kb on + strand at 1189.050 kb on - strand at 1189.050 kb on - strand at 1189.050 kb on - strand at 1189.050 kb on - strand at 1189.131 kb on + strand at 1189.131 kb on + strand at 1189.132 kb on - strand at 1189.175 kb on - strand at 1189.175 kb on - strand at 1189.210 kb on - strand at 1189.218 kb on - strand at 1189.327 kb on - strand, within IAI46_05520 at 1189.353 kb on - strand at 1189.373 kb on - strand at 1189.415 kb on - strand at 1189.470 kb on + strand at 1189.475 kb on - strand at 1189.526 kb on - strand at 1189.602 kb on + strand at 1189.602 kb on + strand at 1189.617 kb on - strand at 1189.627 kb on + strand at 1189.627 kb on + strand at 1189.718 kb on + strand at 1189.807 kb on - strand, within IAI46_05525
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 1,187,398 + -0.0 1,187,398 + +0.1 1,187,433 + +0.2 1,187,447 + -0.6 1,187,447 + -0.1 1,187,504 + -0.1 1,187,511 + +0.6 1,187,512 - -0.2 1,187,530 + -0.9 1,187,533 + -0.6 1,187,533 + +0.3 1,187,571 - +0.5 1,187,575 - -0.3 1,187,575 - +0.6 1,187,575 - +1.2 1,187,576 + +0.1 1,187,577 - +0.4 1,187,577 - +0.8 1,187,581 - -0.3 1,187,590 + +0.8 1,187,590 + +0.3 1,187,590 + -0.4 1,187,590 + +0.4 1,187,591 - +0.1 1,187,593 + +0.9 1,187,593 + -0.8 1,187,594 - +0.5 1,187,594 - -0.0 1,187,594 - +1.4 1,187,594 - +0.7 1,187,594 - +0.3 1,187,598 + -0.9 1,187,599 - +0.5 1,187,599 - +1.5 1,187,606 + +0.6 1,187,607 - +0.1 1,187,612 - +0.5 1,187,612 - +1.0 1,187,659 + +0.3 1,187,660 - +0.1 1,187,663 - +1.2 1,187,673 - -0.7 1,187,723 + +0.1 1,187,724 - +0.1 1,187,726 + -1.4 1,187,726 + +0.3 1,187,729 + +0.3 1,187,742 - +1.3 1,187,771 - +0.7 1,187,805 + +0.9 1,187,855 - +0.2 1,187,858 + -0.5 1,187,930 + +1.9 1,187,930 + -0.9 1,187,967 + -0.1 1,187,970 + +1.6 1,187,970 + -0.5 1,187,971 - +0.8 1,188,061 + -0.4 1,188,091 + +0.3 1,188,229 + +0.1 1,188,271 + -1.3 1,188,298 + -0.2 1,188,298 + +0.0 1,188,418 + +0.2 1,188,525 - IAI46_05515 0.27 -0.5 1,188,598 - IAI46_05515 0.41 -0.5 1,188,788 + IAI46_05515 0.78 +0.4 1,188,909 + +0.1 1,188,937 + -0.4 1,188,945 + +0.1 1,188,946 - +1.1 1,189,041 - -0.9 1,189,049 + +0.7 1,189,050 - -0.2 1,189,050 - -0.1 1,189,050 - +0.2 1,189,050 - +0.2 1,189,131 + -0.3 1,189,131 + +0.7 1,189,132 - +0.4 1,189,175 - -0.0 1,189,175 - -0.6 1,189,210 - +0.2 1,189,218 - +0.5 1,189,327 - IAI46_05520 0.88 +0.1 1,189,353 - -1.3 1,189,373 - +0.5 1,189,415 - -0.2 1,189,470 + -0.8 1,189,475 - -0.3 1,189,526 - -0.3 1,189,602 + +1.0 1,189,602 + +0.5 1,189,617 - -0.3 1,189,627 + +1.2 1,189,627 + +0.1 1,189,718 + -1.8 1,189,807 - IAI46_05525 0.17 -0.6
Or see this region's nucleotide sequence