Strain Fitness in Serratia liquefaciens MT49 around IAI46_05430

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05420 and IAI46_05425 are separated by 67 nucleotidesIAI46_05425 and IAI46_05430 are separated by 127 nucleotidesIAI46_05430 and IAI46_05435 are separated by 22 nucleotides IAI46_05420: IAI46_05420 - helix-turn-helix transcriptional regulator, at 1,167,488 to 1,168,285 _05420 IAI46_05425: IAI46_05425 - LysE family translocator, at 1,168,353 to 1,168,985 _05425 IAI46_05430: IAI46_05430 - glucose 1-dehydrogenase, at 1,169,113 to 1,169,862 _05430 IAI46_05435: IAI46_05435 - aldehyde dehydrogenase, at 1,169,885 to 1,171,348 _05435 Position (kb) 1169 1170Strain fitness (log2 ratio) -1 0 1 2at 1168.133 kb on - strand, within IAI46_05420at 1168.133 kb on - strand, within IAI46_05420at 1168.333 kb on - strandat 1168.337 kb on - strandat 1168.382 kb on - strandat 1168.487 kb on - strand, within IAI46_05425at 1168.487 kb on - strand, within IAI46_05425at 1168.510 kb on + strand, within IAI46_05425at 1168.511 kb on - strand, within IAI46_05425at 1168.511 kb on - strand, within IAI46_05425at 1168.511 kb on - strand, within IAI46_05425at 1168.511 kb on - strand, within IAI46_05425at 1168.573 kb on - strand, within IAI46_05425at 1168.573 kb on - strand, within IAI46_05425at 1168.602 kb on + strand, within IAI46_05425at 1168.602 kb on + strand, within IAI46_05425at 1168.602 kb on + strand, within IAI46_05425at 1168.602 kb on + strand, within IAI46_05425at 1168.602 kb on + strand, within IAI46_05425at 1168.692 kb on + strand, within IAI46_05425at 1168.721 kb on + strand, within IAI46_05425at 1168.754 kb on + strand, within IAI46_05425at 1168.807 kb on + strand, within IAI46_05425at 1168.808 kb on - strand, within IAI46_05425at 1168.811 kb on - strand, within IAI46_05425at 1168.811 kb on - strand, within IAI46_05425at 1168.829 kb on + strand, within IAI46_05425at 1168.830 kb on - strand, within IAI46_05425at 1168.830 kb on - strand, within IAI46_05425at 1168.830 kb on - strand, within IAI46_05425at 1168.832 kb on + strand, within IAI46_05425at 1168.833 kb on - strand, within IAI46_05425at 1168.859 kb on - strand, within IAI46_05425at 1168.888 kb on + strand, within IAI46_05425at 1168.914 kb on + strand, within IAI46_05425at 1168.916 kb on + strand, within IAI46_05425at 1168.922 kb on + strandat 1168.922 kb on + strandat 1168.922 kb on + strandat 1168.948 kb on + strandat 1168.949 kb on - strandat 1169.032 kb on + strandat 1169.032 kb on + strandat 1169.032 kb on + strandat 1169.112 kb on - strandat 1169.217 kb on + strand, within IAI46_05430at 1169.218 kb on - strand, within IAI46_05430at 1169.221 kb on + strand, within IAI46_05430at 1169.222 kb on - strand, within IAI46_05430at 1169.256 kb on + strand, within IAI46_05430at 1169.257 kb on - strand, within IAI46_05430at 1169.344 kb on - strand, within IAI46_05430at 1169.357 kb on - strand, within IAI46_05430at 1169.357 kb on - strand, within IAI46_05430at 1169.372 kb on + strand, within IAI46_05430at 1169.372 kb on + strand, within IAI46_05430at 1169.373 kb on - strand, within IAI46_05430at 1169.373 kb on - strand, within IAI46_05430at 1169.406 kb on + strand, within IAI46_05430at 1169.422 kb on - strand, within IAI46_05430at 1169.474 kb on - strand, within IAI46_05430at 1169.575 kb on + strand, within IAI46_05430at 1169.576 kb on - strand, within IAI46_05430at 1169.892 kb on + strandat 1169.892 kb on + strandat 1169.896 kb on + strandat 1169.897 kb on - strandat 1169.897 kb on - strandat 1170.000 kb on - strandat 1170.000 kb on - strandat 1170.278 kb on + strand, within IAI46_05435at 1170.458 kb on - strand, within IAI46_05435

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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1,168,133 - IAI46_05420 0.81 -0.1
1,168,133 - IAI46_05420 0.81 +0.7
1,168,333 - +0.3
1,168,337 - +1.8
1,168,382 - -0.2
1,168,487 - IAI46_05425 0.21 -0.2
1,168,487 - IAI46_05425 0.21 +0.7
1,168,510 + IAI46_05425 0.25 -0.1
1,168,511 - IAI46_05425 0.25 -0.2
1,168,511 - IAI46_05425 0.25 +0.1
1,168,511 - IAI46_05425 0.25 +0.1
1,168,511 - IAI46_05425 0.25 +0.3
1,168,573 - IAI46_05425 0.35 +0.1
1,168,573 - IAI46_05425 0.35 +0.7
1,168,602 + IAI46_05425 0.39 -0.8
1,168,602 + IAI46_05425 0.39 +0.8
1,168,602 + IAI46_05425 0.39 +0.2
1,168,602 + IAI46_05425 0.39 -0.9
1,168,602 + IAI46_05425 0.39 +0.0
1,168,692 + IAI46_05425 0.54 +0.2
1,168,721 + IAI46_05425 0.58 -0.3
1,168,754 + IAI46_05425 0.63 +0.8
1,168,807 + IAI46_05425 0.72 +2.2
1,168,808 - IAI46_05425 0.72 +0.3
1,168,811 - IAI46_05425 0.72 +0.2
1,168,811 - IAI46_05425 0.72 -0.1
1,168,829 + IAI46_05425 0.75 -0.8
1,168,830 - IAI46_05425 0.75 +1.8
1,168,830 - IAI46_05425 0.75 +0.5
1,168,830 - IAI46_05425 0.75 +0.5
1,168,832 + IAI46_05425 0.76 +0.6
1,168,833 - IAI46_05425 0.76 +0.6
1,168,859 - IAI46_05425 0.80 +0.2
1,168,888 + IAI46_05425 0.85 +0.2
1,168,914 + IAI46_05425 0.89 +0.8
1,168,916 + IAI46_05425 0.89 +0.7
1,168,922 + -0.7
1,168,922 + +0.7
1,168,922 + +1.4
1,168,948 + -0.1
1,168,949 - +1.3
1,169,032 + +0.4
1,169,032 + -0.2
1,169,032 + -0.3
1,169,112 - -0.2
1,169,217 + IAI46_05430 0.14 +0.6
1,169,218 - IAI46_05430 0.14 -0.1
1,169,221 + IAI46_05430 0.14 -0.9
1,169,222 - IAI46_05430 0.15 -0.5
1,169,256 + IAI46_05430 0.19 -0.0
1,169,257 - IAI46_05430 0.19 -0.7
1,169,344 - IAI46_05430 0.31 +0.7
1,169,357 - IAI46_05430 0.33 +0.3
1,169,357 - IAI46_05430 0.33 -0.1
1,169,372 + IAI46_05430 0.35 +0.5
1,169,372 + IAI46_05430 0.35 -0.6
1,169,373 - IAI46_05430 0.35 +0.9
1,169,373 - IAI46_05430 0.35 -0.2
1,169,406 + IAI46_05430 0.39 +0.6
1,169,422 - IAI46_05430 0.41 +0.5
1,169,474 - IAI46_05430 0.48 -1.2
1,169,575 + IAI46_05430 0.62 +0.7
1,169,576 - IAI46_05430 0.62 +0.6
1,169,892 + +0.4
1,169,892 + +0.2
1,169,896 + -0.3
1,169,897 - +0.2
1,169,897 - -0.0
1,170,000 - +0.7
1,170,000 - -1.5
1,170,278 + IAI46_05435 0.27 +0.1
1,170,458 - IAI46_05435 0.39 -0.1

Or see this region's nucleotide sequence