Strain Fitness in Serratia liquefaciens MT49 around IAI46_04950

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04940 and IAI46_04945 are separated by 33 nucleotidesIAI46_04945 and IAI46_04950 overlap by 38 nucleotidesIAI46_04950 and IAI46_04955 are separated by 167 nucleotidesIAI46_04955 and IAI46_04960 are separated by 201 nucleotides IAI46_04940: IAI46_04940 - tRNA 4-thiouridine(8) synthase ThiI, at 1,063,951 to 1,065,399 _04940 IAI46_04945: IAI46_04945 - protein deglycase YajL, at 1,065,433 to 1,066,023 _04945 IAI46_04950: IAI46_04950 - 2-dehydropantoate 2-reductase, at 1,065,986 to 1,066,897 _04950 IAI46_04955: IAI46_04955 - YajQ family cyclic di-GMP-binding protein, at 1,067,065 to 1,067,556 _04955 IAI46_04960: IAI46_04960 - MFS transporter, at 1,067,758 to 1,069,122 _04960 Position (kb) 1065 1066 1067Strain fitness (log2 ratio) -1 0 1 2 3at 1065.196 kb on - strand, within IAI46_04940at 1065.260 kb on - strandat 1065.261 kb on + strandat 1065.304 kb on + strandat 1065.304 kb on + strandat 1065.305 kb on - strandat 1065.314 kb on - strandat 1065.353 kb on - strandat 1065.371 kb on - strandat 1065.371 kb on - strandat 1065.511 kb on + strand, within IAI46_04945at 1065.574 kb on - strand, within IAI46_04945at 1065.588 kb on - strand, within IAI46_04945at 1065.588 kb on - strand, within IAI46_04945at 1065.590 kb on - strand, within IAI46_04945at 1065.654 kb on + strand, within IAI46_04945at 1065.655 kb on - strand, within IAI46_04945at 1065.655 kb on - strand, within IAI46_04945at 1065.760 kb on + strand, within IAI46_04945at 1065.761 kb on - strand, within IAI46_04945at 1065.841 kb on - strand, within IAI46_04945at 1065.891 kb on + strand, within IAI46_04945at 1065.891 kb on + strand, within IAI46_04945at 1065.892 kb on - strand, within IAI46_04945at 1065.892 kb on - strand, within IAI46_04945at 1065.892 kb on - strand, within IAI46_04945at 1065.892 kb on - strand, within IAI46_04945at 1065.892 kb on - strand, within IAI46_04945at 1065.892 kb on - strand, within IAI46_04945at 1065.892 kb on - strand, within IAI46_04945at 1065.924 kb on + strand, within IAI46_04945at 1065.959 kb on - strand, within IAI46_04945at 1065.988 kb on - strandat 1066.024 kb on - strandat 1066.024 kb on - strandat 1066.110 kb on + strand, within IAI46_04950at 1066.123 kb on - strand, within IAI46_04950at 1066.123 kb on - strand, within IAI46_04950at 1066.209 kb on + strand, within IAI46_04950at 1066.209 kb on + strand, within IAI46_04950at 1066.210 kb on - strand, within IAI46_04950at 1066.210 kb on - strand, within IAI46_04950at 1066.234 kb on + strand, within IAI46_04950at 1066.234 kb on + strand, within IAI46_04950at 1066.234 kb on + strand, within IAI46_04950at 1066.235 kb on - strand, within IAI46_04950at 1066.235 kb on - strand, within IAI46_04950at 1066.235 kb on - strand, within IAI46_04950at 1066.239 kb on + strand, within IAI46_04950at 1066.240 kb on - strand, within IAI46_04950at 1066.327 kb on + strand, within IAI46_04950at 1066.327 kb on + strand, within IAI46_04950at 1066.329 kb on + strand, within IAI46_04950at 1066.329 kb on + strand, within IAI46_04950at 1066.330 kb on - strand, within IAI46_04950at 1066.330 kb on - strand, within IAI46_04950at 1066.330 kb on - strand, within IAI46_04950at 1066.348 kb on + strand, within IAI46_04950at 1066.349 kb on - strand, within IAI46_04950at 1066.510 kb on + strand, within IAI46_04950at 1066.513 kb on + strand, within IAI46_04950at 1066.513 kb on + strand, within IAI46_04950at 1066.513 kb on + strand, within IAI46_04950at 1066.513 kb on + strand, within IAI46_04950at 1066.514 kb on - strand, within IAI46_04950at 1066.514 kb on - strand, within IAI46_04950at 1066.685 kb on + strand, within IAI46_04950at 1066.809 kb on - strandat 1066.820 kb on + strandat 1066.820 kb on + strandat 1066.821 kb on - strandat 1066.840 kb on - strandat 1066.890 kb on - strandat 1066.890 kb on - strandat 1066.890 kb on - strandat 1066.933 kb on - strandat 1066.936 kb on + strandat 1066.941 kb on + strandat 1066.947 kb on + strandat 1066.997 kb on + strandat 1067.039 kb on + strandat 1067.039 kb on + strandat 1067.064 kb on + strandat 1067.064 kb on + strandat 1067.064 kb on + strandat 1067.097 kb on + strandat 1067.097 kb on + strandat 1067.112 kb on + strandat 1067.113 kb on - strandat 1067.253 kb on + strand, within IAI46_04955at 1067.367 kb on + strand, within IAI46_04955at 1067.466 kb on + strand, within IAI46_04955at 1067.575 kb on + strandat 1067.576 kb on - strandat 1067.576 kb on - strandat 1067.577 kb on + strandat 1067.578 kb on - strandat 1067.704 kb on + strandat 1067.760 kb on - strandat 1067.819 kb on - strandat 1067.823 kb on - strandat 1067.860 kb on + strandat 1067.861 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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1,065,196 - IAI46_04940 0.86 +0.3
1,065,260 - +0.1
1,065,261 + -1.4
1,065,304 + -0.3
1,065,304 + +1.1
1,065,305 - -0.3
1,065,314 - +0.5
1,065,353 - -0.1
1,065,371 - -0.8
1,065,371 - -0.2
1,065,511 + IAI46_04945 0.13 +0.4
1,065,574 - IAI46_04945 0.24 +0.2
1,065,588 - IAI46_04945 0.26 +0.6
1,065,588 - IAI46_04945 0.26 +0.1
1,065,590 - IAI46_04945 0.27 +0.6
1,065,654 + IAI46_04945 0.37 -0.3
1,065,655 - IAI46_04945 0.38 +0.8
1,065,655 - IAI46_04945 0.38 +0.3
1,065,760 + IAI46_04945 0.55 +1.8
1,065,761 - IAI46_04945 0.55 -0.7
1,065,841 - IAI46_04945 0.69 +0.5
1,065,891 + IAI46_04945 0.77 -0.5
1,065,891 + IAI46_04945 0.77 +0.8
1,065,892 - IAI46_04945 0.78 -0.0
1,065,892 - IAI46_04945 0.78 -1.1
1,065,892 - IAI46_04945 0.78 +1.5
1,065,892 - IAI46_04945 0.78 +1.6
1,065,892 - IAI46_04945 0.78 +2.9
1,065,892 - IAI46_04945 0.78 +0.1
1,065,892 - IAI46_04945 0.78 -0.1
1,065,924 + IAI46_04945 0.83 -0.3
1,065,959 - IAI46_04945 0.89 +0.7
1,065,988 - +0.3
1,066,024 - -1.3
1,066,024 - +1.1
1,066,110 + IAI46_04950 0.14 +0.5
1,066,123 - IAI46_04950 0.15 -0.1
1,066,123 - IAI46_04950 0.15 -0.9
1,066,209 + IAI46_04950 0.24 -0.1
1,066,209 + IAI46_04950 0.24 -0.3
1,066,210 - IAI46_04950 0.25 +0.6
1,066,210 - IAI46_04950 0.25 -1.1
1,066,234 + IAI46_04950 0.27 +0.2
1,066,234 + IAI46_04950 0.27 +0.1
1,066,234 + IAI46_04950 0.27 +0.1
1,066,235 - IAI46_04950 0.27 +0.1
1,066,235 - IAI46_04950 0.27 +0.3
1,066,235 - IAI46_04950 0.27 -0.3
1,066,239 + IAI46_04950 0.28 -0.4
1,066,240 - IAI46_04950 0.28 +0.2
1,066,327 + IAI46_04950 0.37 +0.0
1,066,327 + IAI46_04950 0.37 +0.1
1,066,329 + IAI46_04950 0.38 +0.2
1,066,329 + IAI46_04950 0.38 -0.1
1,066,330 - IAI46_04950 0.38 +0.9
1,066,330 - IAI46_04950 0.38 +0.3
1,066,330 - IAI46_04950 0.38 -0.3
1,066,348 + IAI46_04950 0.40 +0.5
1,066,349 - IAI46_04950 0.40 +0.8
1,066,510 + IAI46_04950 0.57 +0.4
1,066,513 + IAI46_04950 0.58 +0.8
1,066,513 + IAI46_04950 0.58 -0.9
1,066,513 + IAI46_04950 0.58 +0.6
1,066,513 + IAI46_04950 0.58 +0.0
1,066,514 - IAI46_04950 0.58 -0.1
1,066,514 - IAI46_04950 0.58 +1.2
1,066,685 + IAI46_04950 0.77 +0.1
1,066,809 - +0.8
1,066,820 + -0.1
1,066,820 + +0.8
1,066,821 - -0.7
1,066,840 - +0.1
1,066,890 - -1.3
1,066,890 - +0.9
1,066,890 - -0.0
1,066,933 - +0.8
1,066,936 + -0.3
1,066,941 + +0.0
1,066,947 + +0.3
1,066,997 + -0.4
1,067,039 + -1.3
1,067,039 + -0.4
1,067,064 + +0.7
1,067,064 + -0.1
1,067,064 + -0.4
1,067,097 + -0.2
1,067,097 + +0.1
1,067,112 + +0.1
1,067,113 - +0.4
1,067,253 + IAI46_04955 0.38 -0.1
1,067,367 + IAI46_04955 0.61 +0.4
1,067,466 + IAI46_04955 0.82 +0.2
1,067,575 + -0.1
1,067,576 - -0.6
1,067,576 - +0.2
1,067,577 + +1.3
1,067,578 - +0.6
1,067,704 + +0.4
1,067,760 - +1.1
1,067,819 - +0.4
1,067,823 - +0.2
1,067,860 + +0.1
1,067,861 - -0.8

Or see this region's nucleotide sequence