Strain Fitness in Serratia liquefaciens MT49 around IAI46_03835

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03830 and IAI46_03835 are separated by 250 nucleotidesIAI46_03835 and IAI46_03840 are separated by 112 nucleotides IAI46_03830: IAI46_03830 - MFS transporter, at 834,695 to 836,089 _03830 IAI46_03835: IAI46_03835 - nicotinamide-nucleotide amidase, at 836,340 to 836,828 _03835 IAI46_03840: IAI46_03840 - recombinase RecA, at 836,941 to 838,002 _03840 Position (kb) 836 837Strain fitness (log2 ratio) -2 -1 0 1at 835.451 kb on + strand, within IAI46_03830at 835.452 kb on - strand, within IAI46_03830at 835.507 kb on - strand, within IAI46_03830at 835.511 kb on + strand, within IAI46_03830at 835.511 kb on + strand, within IAI46_03830at 835.512 kb on - strand, within IAI46_03830at 835.512 kb on - strand, within IAI46_03830at 835.512 kb on - strand, within IAI46_03830at 835.512 kb on - strand, within IAI46_03830at 835.534 kb on + strand, within IAI46_03830at 835.534 kb on + strand, within IAI46_03830at 835.534 kb on + strand, within IAI46_03830at 835.535 kb on - strand, within IAI46_03830at 835.535 kb on - strand, within IAI46_03830at 835.567 kb on + strand, within IAI46_03830at 835.616 kb on - strand, within IAI46_03830at 835.619 kb on - strand, within IAI46_03830at 835.671 kb on + strand, within IAI46_03830at 835.672 kb on - strand, within IAI46_03830at 835.672 kb on - strand, within IAI46_03830at 835.672 kb on - strand, within IAI46_03830at 835.675 kb on + strand, within IAI46_03830at 835.685 kb on - strand, within IAI46_03830at 835.686 kb on + strand, within IAI46_03830at 835.686 kb on + strand, within IAI46_03830at 835.686 kb on + strand, within IAI46_03830at 835.686 kb on + strand, within IAI46_03830at 835.686 kb on + strand, within IAI46_03830at 835.686 kb on + strand, within IAI46_03830at 835.687 kb on - strand, within IAI46_03830at 835.687 kb on - strand, within IAI46_03830at 835.812 kb on + strand, within IAI46_03830at 835.812 kb on + strand, within IAI46_03830at 835.812 kb on + strand, within IAI46_03830at 835.812 kb on + strand, within IAI46_03830at 835.813 kb on - strand, within IAI46_03830at 835.869 kb on + strand, within IAI46_03830at 835.870 kb on - strand, within IAI46_03830at 835.870 kb on - strand, within IAI46_03830at 835.939 kb on - strand, within IAI46_03830at 835.939 kb on - strand, within IAI46_03830at 835.939 kb on - strand, within IAI46_03830at 835.939 kb on - strand, within IAI46_03830at 835.984 kb on + strandat 835.991 kb on + strandat 835.991 kb on + strandat 836.007 kb on + strandat 836.008 kb on - strandat 836.008 kb on - strandat 836.008 kb on - strandat 836.008 kb on - strandat 836.008 kb on - strandat 836.008 kb on - strandat 836.008 kb on - strandat 836.053 kb on + strandat 836.053 kb on + strandat 836.054 kb on - strandat 836.055 kb on + strandat 836.055 kb on + strandat 836.055 kb on + strandat 836.055 kb on + strandat 836.056 kb on - strandat 836.056 kb on - strandat 836.056 kb on - strandat 836.076 kb on - strandat 836.092 kb on + strandat 836.092 kb on + strandat 836.092 kb on + strandat 836.092 kb on + strandat 836.092 kb on + strandat 836.092 kb on + strandat 836.093 kb on - strandat 836.093 kb on - strandat 836.093 kb on - strandat 836.093 kb on - strandat 836.093 kb on - strandat 836.200 kb on - strandat 836.208 kb on + strandat 836.212 kb on - strandat 836.224 kb on + strandat 836.231 kb on + strandat 836.232 kb on - strandat 836.284 kb on + strandat 836.284 kb on + strandat 836.285 kb on - strandat 836.285 kb on - strandat 836.285 kb on - strandat 836.285 kb on - strandat 836.293 kb on + strandat 836.294 kb on - strandat 836.300 kb on + strandat 836.303 kb on + strandat 836.314 kb on + strandat 836.314 kb on + strandat 836.314 kb on + strandat 836.314 kb on + strandat 836.315 kb on - strandat 836.315 kb on - strandat 836.316 kb on + strandat 836.317 kb on - strandat 836.317 kb on - strandat 836.339 kb on + strandat 836.396 kb on + strand, within IAI46_03835at 836.505 kb on + strand, within IAI46_03835at 836.505 kb on + strand, within IAI46_03835at 836.506 kb on - strand, within IAI46_03835at 836.506 kb on - strand, within IAI46_03835at 836.534 kb on - strand, within IAI46_03835at 836.534 kb on - strand, within IAI46_03835at 836.694 kb on - strand, within IAI46_03835at 836.854 kb on + strandat 836.887 kb on + strandat 836.887 kb on + strandat 836.888 kb on - strandat 836.888 kb on - strandat 836.946 kb on + strandat 837.045 kb on + strandat 837.045 kb on + strandat 837.045 kb on + strandat 837.053 kb on + strand, within IAI46_03840at 837.054 kb on - strand, within IAI46_03840at 837.156 kb on + strand, within IAI46_03840at 837.156 kb on + strand, within IAI46_03840at 837.338 kb on + strand, within IAI46_03840at 837.450 kb on + strand, within IAI46_03840at 837.450 kb on + strand, within IAI46_03840at 837.471 kb on + strand, within IAI46_03840at 837.471 kb on + strand, within IAI46_03840at 837.745 kb on - strand, within IAI46_03840at 837.814 kb on + strand, within IAI46_03840at 837.815 kb on - strand, within IAI46_03840at 837.815 kb on - strand, within IAI46_03840at 837.815 kb on - strand, within IAI46_03840

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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835,451 + IAI46_03830 0.54 +0.4
835,452 - IAI46_03830 0.54 +0.5
835,507 - IAI46_03830 0.58 +0.0
835,511 + IAI46_03830 0.58 -0.5
835,511 + IAI46_03830 0.58 +0.4
835,512 - IAI46_03830 0.59 +0.7
835,512 - IAI46_03830 0.59 +0.7
835,512 - IAI46_03830 0.59 -0.4
835,512 - IAI46_03830 0.59 -0.3
835,534 + IAI46_03830 0.60 -0.7
835,534 + IAI46_03830 0.60 -0.2
835,534 + IAI46_03830 0.60 +0.2
835,535 - IAI46_03830 0.60 +0.4
835,535 - IAI46_03830 0.60 +1.0
835,567 + IAI46_03830 0.63 +1.7
835,616 - IAI46_03830 0.66 -0.5
835,619 - IAI46_03830 0.66 +1.1
835,671 + IAI46_03830 0.70 +0.0
835,672 - IAI46_03830 0.70 -0.1
835,672 - IAI46_03830 0.70 +0.4
835,672 - IAI46_03830 0.70 +0.1
835,675 + IAI46_03830 0.70 +1.1
835,685 - IAI46_03830 0.71 +0.1
835,686 + IAI46_03830 0.71 +1.3
835,686 + IAI46_03830 0.71 -0.8
835,686 + IAI46_03830 0.71 -0.0
835,686 + IAI46_03830 0.71 +0.2
835,686 + IAI46_03830 0.71 +0.7
835,686 + IAI46_03830 0.71 -0.3
835,687 - IAI46_03830 0.71 +0.3
835,687 - IAI46_03830 0.71 +0.1
835,812 + IAI46_03830 0.80 +0.2
835,812 + IAI46_03830 0.80 +0.2
835,812 + IAI46_03830 0.80 -1.1
835,812 + IAI46_03830 0.80 +0.2
835,813 - IAI46_03830 0.80 +0.2
835,869 + IAI46_03830 0.84 -0.1
835,870 - IAI46_03830 0.84 -0.5
835,870 - IAI46_03830 0.84 -0.2
835,939 - IAI46_03830 0.89 -0.1
835,939 - IAI46_03830 0.89 +1.5
835,939 - IAI46_03830 0.89 +0.3
835,939 - IAI46_03830 0.89 -0.4
835,984 + -1.5
835,991 + -0.7
835,991 + +0.8
836,007 + -0.5
836,008 - +0.7
836,008 - -0.4
836,008 - +0.8
836,008 - -1.1
836,008 - +0.7
836,008 - -0.5
836,008 - +0.5
836,053 + +0.6
836,053 + -0.3
836,054 - -0.3
836,055 + -0.3
836,055 + +0.3
836,055 + -0.0
836,055 + +1.0
836,056 - +0.2
836,056 - +0.7
836,056 - -0.0
836,076 - +0.2
836,092 + -0.4
836,092 + +0.6
836,092 + +0.3
836,092 + -0.6
836,092 + +0.0
836,092 + +0.3
836,093 - +0.0
836,093 - -0.1
836,093 - -0.3
836,093 - +0.7
836,093 - -0.3
836,200 - +0.2
836,208 + +0.1
836,212 - +0.2
836,224 + +0.8
836,231 + +1.2
836,232 - -2.0
836,284 + +0.3
836,284 + +0.9
836,285 - -1.6
836,285 - +0.5
836,285 - -0.1
836,285 - +0.2
836,293 + +0.9
836,294 - +0.0
836,300 + -0.8
836,303 + +1.6
836,314 + -0.7
836,314 + -0.0
836,314 + -0.2
836,314 + -1.4
836,315 - +1.3
836,315 - -0.9
836,316 + +0.4
836,317 - +0.0
836,317 - +0.5
836,339 + +0.1
836,396 + IAI46_03835 0.11 -0.7
836,505 + IAI46_03835 0.34 +0.7
836,505 + IAI46_03835 0.34 -0.2
836,506 - IAI46_03835 0.34 -0.8
836,506 - IAI46_03835 0.34 +1.0
836,534 - IAI46_03835 0.40 -0.2
836,534 - IAI46_03835 0.40 -0.8
836,694 - IAI46_03835 0.72 -0.7
836,854 + +0.4
836,887 + -0.9
836,887 + -0.8
836,888 - -1.8
836,888 - -2.4
836,946 + -0.2
837,045 + -2.1
837,045 + -0.1
837,045 + -1.2
837,053 + IAI46_03840 0.11 -1.1
837,054 - IAI46_03840 0.11 -0.9
837,156 + IAI46_03840 0.20 -2.3
837,156 + IAI46_03840 0.20 -0.2
837,338 + IAI46_03840 0.37 -1.1
837,450 + IAI46_03840 0.48 +0.5
837,450 + IAI46_03840 0.48 -1.6
837,471 + IAI46_03840 0.50 -1.1
837,471 + IAI46_03840 0.50 -0.9
837,745 - IAI46_03840 0.76 -0.2
837,814 + IAI46_03840 0.82 +0.2
837,815 - IAI46_03840 0.82 -0.5
837,815 - IAI46_03840 0.82 -1.3
837,815 - IAI46_03840 0.82 -1.6

Or see this region's nucleotide sequence