Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_03585 and IAI46_03590 are separated by 221 nucleotides IAI46_03590 and IAI46_03595 are separated by 68 nucleotides
IAI46_03585: IAI46_03585 - serine endoprotease DegP, at 774,911 to 776,350
_03585
IAI46_03590: IAI46_03590 - two-component sensor histidine kinase BarA, at 776,572 to 779,304
_03590
IAI46_03595: IAI46_03595 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 779,373 to 780,722
_03595
Position (kb) 776
777
778
779
780 Strain fitness (log2 ratio) -1
0
1
2 at 775.622 kb on - strand, within IAI46_03585 at 775.669 kb on + strand, within IAI46_03585 at 775.766 kb on + strand, within IAI46_03585 at 775.766 kb on + strand, within IAI46_03585 at 775.798 kb on + strand, within IAI46_03585 at 775.798 kb on + strand, within IAI46_03585 at 775.798 kb on + strand, within IAI46_03585 at 775.799 kb on - strand, within IAI46_03585 at 775.799 kb on - strand, within IAI46_03585 at 776.053 kb on + strand, within IAI46_03585 at 776.054 kb on - strand, within IAI46_03585 at 776.095 kb on + strand, within IAI46_03585 at 776.163 kb on + strand, within IAI46_03585 at 776.163 kb on + strand, within IAI46_03585 at 776.164 kb on - strand, within IAI46_03585 at 776.164 kb on - strand, within IAI46_03585 at 776.164 kb on - strand, within IAI46_03585 at 776.164 kb on - strand, within IAI46_03585 at 776.167 kb on + strand, within IAI46_03585 at 776.167 kb on + strand, within IAI46_03585 at 776.167 kb on + strand, within IAI46_03585 at 776.168 kb on - strand, within IAI46_03585 at 776.334 kb on - strand at 776.348 kb on + strand at 776.349 kb on - strand at 776.451 kb on - strand at 776.451 kb on - strand at 776.459 kb on - strand at 776.512 kb on + strand at 776.512 kb on + strand at 776.543 kb on + strand at 776.543 kb on + strand at 776.559 kb on - strand at 776.569 kb on - strand at 776.688 kb on - strand at 776.723 kb on + strand at 776.723 kb on + strand at 776.723 kb on + strand at 776.724 kb on - strand at 776.724 kb on - strand at 776.842 kb on + strand at 776.842 kb on + strand at 777.017 kb on + strand, within IAI46_03590 at 777.018 kb on - strand, within IAI46_03590 at 777.018 kb on - strand, within IAI46_03590 at 777.018 kb on - strand, within IAI46_03590 at 777.018 kb on - strand, within IAI46_03590 at 777.291 kb on + strand, within IAI46_03590 at 777.327 kb on + strand, within IAI46_03590 at 777.578 kb on + strand, within IAI46_03590 at 777.606 kb on + strand, within IAI46_03590 at 777.645 kb on + strand, within IAI46_03590 at 777.646 kb on - strand, within IAI46_03590 at 777.646 kb on - strand, within IAI46_03590 at 777.684 kb on + strand, within IAI46_03590 at 777.686 kb on + strand, within IAI46_03590 at 777.810 kb on + strand, within IAI46_03590 at 777.967 kb on + strand, within IAI46_03590 at 778.017 kb on + strand, within IAI46_03590 at 778.069 kb on - strand, within IAI46_03590 at 778.069 kb on - strand, within IAI46_03590 at 778.218 kb on + strand, within IAI46_03590 at 778.219 kb on - strand, within IAI46_03590 at 778.219 kb on - strand, within IAI46_03590 at 778.219 kb on - strand, within IAI46_03590 at 778.320 kb on - strand, within IAI46_03590 at 778.392 kb on + strand, within IAI46_03590 at 778.605 kb on + strand, within IAI46_03590 at 778.606 kb on - strand, within IAI46_03590 at 778.624 kb on - strand, within IAI46_03590 at 778.624 kb on - strand, within IAI46_03590 at 778.675 kb on - strand, within IAI46_03590 at 778.683 kb on + strand, within IAI46_03590 at 778.684 kb on - strand, within IAI46_03590 at 778.740 kb on + strand, within IAI46_03590 at 778.741 kb on - strand, within IAI46_03590 at 778.787 kb on + strand, within IAI46_03590 at 778.788 kb on - strand, within IAI46_03590 at 778.788 kb on - strand, within IAI46_03590 at 778.832 kb on + strand, within IAI46_03590 at 778.833 kb on - strand, within IAI46_03590 at 778.833 kb on - strand, within IAI46_03590 at 779.003 kb on + strand, within IAI46_03590 at 779.026 kb on - strand, within IAI46_03590 at 779.041 kb on + strand at 779.042 kb on - strand at 779.061 kb on + strand at 779.062 kb on - strand at 779.062 kb on - strand at 779.080 kb on + strand at 779.080 kb on + strand at 779.132 kb on + strand at 779.199 kb on - strand at 779.205 kb on - strand at 779.205 kb on - strand at 779.205 kb on - strand at 779.215 kb on + strand at 779.215 kb on + strand at 779.216 kb on - strand at 779.294 kb on + strand at 779.294 kb on + strand at 779.295 kb on - strand at 779.341 kb on - strand at 779.346 kb on - strand at 779.346 kb on - strand at 779.373 kb on - strand at 779.432 kb on - strand at 779.432 kb on - strand at 779.512 kb on + strand, within IAI46_03595 at 779.772 kb on + strand, within IAI46_03595 at 780.091 kb on - strand, within IAI46_03595 at 780.111 kb on - strand, within IAI46_03595 at 780.141 kb on + strand, within IAI46_03595 at 780.141 kb on + strand, within IAI46_03595 at 780.141 kb on + strand, within IAI46_03595 at 780.141 kb on + strand, within IAI46_03595 at 780.142 kb on - strand, within IAI46_03595 at 780.142 kb on - strand, within IAI46_03595 at 780.145 kb on - strand, within IAI46_03595 at 780.161 kb on - strand, within IAI46_03595 at 780.161 kb on - strand, within IAI46_03595 at 780.166 kb on + strand, within IAI46_03595 at 780.166 kb on + strand, within IAI46_03595 at 780.167 kb on - strand, within IAI46_03595 at 780.167 kb on - strand, within IAI46_03595 at 780.196 kb on + strand, within IAI46_03595 at 780.196 kb on + strand, within IAI46_03595 at 780.208 kb on + strand, within IAI46_03595 at 780.208 kb on + strand, within IAI46_03595 at 780.209 kb on - strand, within IAI46_03595 at 780.209 kb on - strand, within IAI46_03595 at 780.209 kb on - strand, within IAI46_03595 at 780.248 kb on + strand, within IAI46_03595 at 780.248 kb on + strand, within IAI46_03595 at 780.249 kb on - strand, within IAI46_03595
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 775,622 - IAI46_03585 0.49 +2.2 775,669 + IAI46_03585 0.53 +0.2 775,766 + IAI46_03585 0.59 -0.0 775,766 + IAI46_03585 0.59 -0.3 775,798 + IAI46_03585 0.62 +0.4 775,798 + IAI46_03585 0.62 +0.7 775,798 + IAI46_03585 0.62 -0.5 775,799 - IAI46_03585 0.62 -0.6 775,799 - IAI46_03585 0.62 +0.5 776,053 + IAI46_03585 0.79 -0.5 776,054 - IAI46_03585 0.79 -0.1 776,095 + IAI46_03585 0.82 -0.4 776,163 + IAI46_03585 0.87 +0.4 776,163 + IAI46_03585 0.87 +0.6 776,164 - IAI46_03585 0.87 +0.9 776,164 - IAI46_03585 0.87 -1.2 776,164 - IAI46_03585 0.87 +0.6 776,164 - IAI46_03585 0.87 +0.3 776,167 + IAI46_03585 0.87 +2.0 776,167 + IAI46_03585 0.87 +0.9 776,167 + IAI46_03585 0.87 +0.7 776,168 - IAI46_03585 0.87 -0.6 776,334 - +0.4 776,348 + +1.1 776,349 - +0.0 776,451 - +0.3 776,451 - -1.2 776,459 - +0.0 776,512 + +0.0 776,512 + -0.2 776,543 + +0.9 776,543 + +1.0 776,559 - +0.3 776,569 - +0.2 776,688 - -0.9 776,723 + -0.3 776,723 + +0.4 776,723 + -0.6 776,724 - -0.2 776,724 - +0.7 776,842 + +0.1 776,842 + -0.2 777,017 + IAI46_03590 0.16 -0.0 777,018 - IAI46_03590 0.16 -0.6 777,018 - IAI46_03590 0.16 -1.2 777,018 - IAI46_03590 0.16 -0.1 777,018 - IAI46_03590 0.16 +0.2 777,291 + IAI46_03590 0.26 -0.5 777,327 + IAI46_03590 0.28 -0.8 777,578 + IAI46_03590 0.37 -0.2 777,606 + IAI46_03590 0.38 -0.2 777,645 + IAI46_03590 0.39 -0.0 777,646 - IAI46_03590 0.39 +0.3 777,646 - IAI46_03590 0.39 +0.6 777,684 + IAI46_03590 0.41 +0.1 777,686 + IAI46_03590 0.41 +0.5 777,810 + IAI46_03590 0.45 +0.1 777,967 + IAI46_03590 0.51 -0.0 778,017 + IAI46_03590 0.53 +0.1 778,069 - IAI46_03590 0.55 -0.9 778,069 - IAI46_03590 0.55 -0.1 778,218 + IAI46_03590 0.60 -0.6 778,219 - IAI46_03590 0.60 -0.1 778,219 - IAI46_03590 0.60 +0.2 778,219 - IAI46_03590 0.60 -0.2 778,320 - IAI46_03590 0.64 +0.1 778,392 + IAI46_03590 0.67 -1.3 778,605 + IAI46_03590 0.74 +0.1 778,606 - IAI46_03590 0.74 -0.4 778,624 - IAI46_03590 0.75 -0.4 778,624 - IAI46_03590 0.75 +0.3 778,675 - IAI46_03590 0.77 +0.2 778,683 + IAI46_03590 0.77 -0.3 778,684 - IAI46_03590 0.77 +0.4 778,740 + IAI46_03590 0.79 +0.0 778,741 - IAI46_03590 0.79 +0.5 778,787 + IAI46_03590 0.81 -0.2 778,788 - IAI46_03590 0.81 -0.3 778,788 - IAI46_03590 0.81 +1.0 778,832 + IAI46_03590 0.83 -0.7 778,833 - IAI46_03590 0.83 -0.2 778,833 - IAI46_03590 0.83 -0.1 779,003 + IAI46_03590 0.89 +0.4 779,026 - IAI46_03590 0.90 -0.6 779,041 + +0.5 779,042 - +0.2 779,061 + -0.3 779,062 - +0.0 779,062 - -0.2 779,080 + -0.1 779,080 + -0.1 779,132 + +0.1 779,199 - -0.9 779,205 - -0.5 779,205 - -0.2 779,205 - +0.2 779,215 + +0.3 779,215 + +0.4 779,216 - -0.4 779,294 + +0.5 779,294 + +0.2 779,295 - +0.8 779,341 - +0.4 779,346 - -0.6 779,346 - +0.4 779,373 - +1.0 779,432 - +0.6 779,432 - +0.1 779,512 + IAI46_03595 0.10 +0.4 779,772 + IAI46_03595 0.30 +0.0 780,091 - IAI46_03595 0.53 -0.1 780,111 - IAI46_03595 0.55 +0.2 780,141 + IAI46_03595 0.57 -0.0 780,141 + IAI46_03595 0.57 +0.3 780,141 + IAI46_03595 0.57 +0.3 780,141 + IAI46_03595 0.57 +0.4 780,142 - IAI46_03595 0.57 -0.6 780,142 - IAI46_03595 0.57 +1.9 780,145 - IAI46_03595 0.57 +0.6 780,161 - IAI46_03595 0.58 +0.6 780,161 - IAI46_03595 0.58 +0.0 780,166 + IAI46_03595 0.59 +0.5 780,166 + IAI46_03595 0.59 +0.7 780,167 - IAI46_03595 0.59 -0.0 780,167 - IAI46_03595 0.59 +0.5 780,196 + IAI46_03595 0.61 -0.2 780,196 + IAI46_03595 0.61 +1.2 780,208 + IAI46_03595 0.62 +1.3 780,208 + IAI46_03595 0.62 +0.3 780,209 - IAI46_03595 0.62 +0.7 780,209 - IAI46_03595 0.62 -1.3 780,209 - IAI46_03595 0.62 +0.1 780,248 + IAI46_03595 0.65 +0.6 780,248 + IAI46_03595 0.65 +0.3 780,249 - IAI46_03595 0.65 +0.1
Or see this region's nucleotide sequence