Strain Fitness in Serratia liquefaciens MT49 around IAI46_02630

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02625 and IAI46_02630 are separated by 102 nucleotidesIAI46_02630 and IAI46_02635 are separated by 2 nucleotides IAI46_02625: IAI46_02625 - phospholipase, at 565,507 to 566,757 _02625 IAI46_02630: IAI46_02630 - P1 family peptidase, at 566,860 to 567,966 _02630 IAI46_02635: IAI46_02635 - APC family permease, at 567,969 to 569,345 _02635 Position (kb) 566 567 568Strain fitness (log2 ratio) -2 -1 0 1at 565.860 kb on + strand, within IAI46_02625at 565.860 kb on + strand, within IAI46_02625at 565.861 kb on - strand, within IAI46_02625at 565.861 kb on - strand, within IAI46_02625at 565.884 kb on + strand, within IAI46_02625at 565.911 kb on + strand, within IAI46_02625at 565.912 kb on - strand, within IAI46_02625at 565.912 kb on - strand, within IAI46_02625at 565.912 kb on - strand, within IAI46_02625at 565.921 kb on + strand, within IAI46_02625at 565.957 kb on + strand, within IAI46_02625at 566.162 kb on + strand, within IAI46_02625at 566.162 kb on + strand, within IAI46_02625at 566.162 kb on + strand, within IAI46_02625at 566.182 kb on + strand, within IAI46_02625at 566.182 kb on + strand, within IAI46_02625at 566.207 kb on - strand, within IAI46_02625at 566.282 kb on + strand, within IAI46_02625at 566.282 kb on + strand, within IAI46_02625at 566.297 kb on - strand, within IAI46_02625at 566.336 kb on - strand, within IAI46_02625at 566.338 kb on + strand, within IAI46_02625at 566.339 kb on - strand, within IAI46_02625at 566.339 kb on - strand, within IAI46_02625at 566.415 kb on + strand, within IAI46_02625at 566.599 kb on + strand, within IAI46_02625at 566.617 kb on - strand, within IAI46_02625at 566.671 kb on + strandat 566.671 kb on + strandat 566.672 kb on - strandat 566.695 kb on + strandat 566.696 kb on - strandat 566.827 kb on + strandat 566.828 kb on - strandat 566.828 kb on - strandat 566.861 kb on + strandat 566.971 kb on - strand, within IAI46_02630at 567.020 kb on + strand, within IAI46_02630at 567.021 kb on - strand, within IAI46_02630at 567.052 kb on - strand, within IAI46_02630at 567.052 kb on - strand, within IAI46_02630at 567.052 kb on - strand, within IAI46_02630at 567.071 kb on + strand, within IAI46_02630at 567.071 kb on + strand, within IAI46_02630at 567.071 kb on + strand, within IAI46_02630at 567.288 kb on + strand, within IAI46_02630at 567.288 kb on + strand, within IAI46_02630at 567.288 kb on + strand, within IAI46_02630at 567.288 kb on + strand, within IAI46_02630at 567.289 kb on - strand, within IAI46_02630at 567.577 kb on + strand, within IAI46_02630at 567.577 kb on + strand, within IAI46_02630at 567.589 kb on - strand, within IAI46_02630at 567.589 kb on - strand, within IAI46_02630at 567.596 kb on + strand, within IAI46_02630at 567.597 kb on - strand, within IAI46_02630at 567.597 kb on - strand, within IAI46_02630at 567.971 kb on - strandat 568.022 kb on + strandat 568.022 kb on + strandat 568.023 kb on - strandat 568.024 kb on + strandat 568.024 kb on + strandat 568.024 kb on + strandat 568.024 kb on + strandat 568.024 kb on + strandat 568.024 kb on + strandat 568.024 kb on + strandat 568.024 kb on + strandat 568.024 kb on + strandat 568.025 kb on - strandat 568.025 kb on - strandat 568.025 kb on - strandat 568.064 kb on + strandat 568.065 kb on - strandat 568.065 kb on - strandat 568.065 kb on - strandat 568.068 kb on - strandat 568.068 kb on - strandat 568.111 kb on + strand, within IAI46_02635at 568.111 kb on + strand, within IAI46_02635at 568.111 kb on + strand, within IAI46_02635at 568.111 kb on + strand, within IAI46_02635at 568.112 kb on - strand, within IAI46_02635at 568.112 kb on - strand, within IAI46_02635at 568.112 kb on - strand, within IAI46_02635at 568.182 kb on + strand, within IAI46_02635at 568.182 kb on + strand, within IAI46_02635at 568.225 kb on + strand, within IAI46_02635at 568.225 kb on + strand, within IAI46_02635at 568.225 kb on + strand, within IAI46_02635at 568.251 kb on - strand, within IAI46_02635at 568.422 kb on - strand, within IAI46_02635at 568.466 kb on - strand, within IAI46_02635at 568.523 kb on - strand, within IAI46_02635at 568.523 kb on - strand, within IAI46_02635at 568.681 kb on + strand, within IAI46_02635at 568.681 kb on + strand, within IAI46_02635at 568.681 kb on + strand, within IAI46_02635at 568.681 kb on + strand, within IAI46_02635at 568.681 kb on + strand, within IAI46_02635at 568.682 kb on - strand, within IAI46_02635at 568.682 kb on - strand, within IAI46_02635at 568.682 kb on - strand, within IAI46_02635at 568.706 kb on - strand, within IAI46_02635at 568.779 kb on + strand, within IAI46_02635at 568.779 kb on + strand, within IAI46_02635at 568.780 kb on - strand, within IAI46_02635at 568.780 kb on - strand, within IAI46_02635at 568.958 kb on + strand, within IAI46_02635

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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565,860 + IAI46_02625 0.28 +0.3
565,860 + IAI46_02625 0.28 +0.7
565,861 - IAI46_02625 0.28 +1.2
565,861 - IAI46_02625 0.28 -0.5
565,884 + IAI46_02625 0.30 -0.7
565,911 + IAI46_02625 0.32 -0.7
565,912 - IAI46_02625 0.32 -0.1
565,912 - IAI46_02625 0.32 -1.0
565,912 - IAI46_02625 0.32 +0.5
565,921 + IAI46_02625 0.33 -0.1
565,957 + IAI46_02625 0.36 -0.3
566,162 + IAI46_02625 0.52 -0.1
566,162 + IAI46_02625 0.52 +0.6
566,162 + IAI46_02625 0.52 -0.1
566,182 + IAI46_02625 0.54 +0.1
566,182 + IAI46_02625 0.54 +0.5
566,207 - IAI46_02625 0.56 -1.9
566,282 + IAI46_02625 0.62 +0.3
566,282 + IAI46_02625 0.62 -0.2
566,297 - IAI46_02625 0.63 +1.3
566,336 - IAI46_02625 0.66 -0.3
566,338 + IAI46_02625 0.66 -0.3
566,339 - IAI46_02625 0.67 -1.2
566,339 - IAI46_02625 0.67 -1.0
566,415 + IAI46_02625 0.73 -0.1
566,599 + IAI46_02625 0.87 +0.8
566,617 - IAI46_02625 0.89 -0.7
566,671 + -0.6
566,671 + -0.1
566,672 - +0.3
566,695 + +0.1
566,696 - +0.3
566,827 + +0.3
566,828 - +0.5
566,828 - +0.2
566,861 + +0.2
566,971 - IAI46_02630 0.10 -0.1
567,020 + IAI46_02630 0.14 +1.1
567,021 - IAI46_02630 0.15 +0.1
567,052 - IAI46_02630 0.17 +0.2
567,052 - IAI46_02630 0.17 -0.5
567,052 - IAI46_02630 0.17 -0.7
567,071 + IAI46_02630 0.19 +0.4
567,071 + IAI46_02630 0.19 +0.1
567,071 + IAI46_02630 0.19 -0.3
567,288 + IAI46_02630 0.39 -0.2
567,288 + IAI46_02630 0.39 +0.7
567,288 + IAI46_02630 0.39 +0.2
567,288 + IAI46_02630 0.39 -0.6
567,289 - IAI46_02630 0.39 +0.2
567,577 + IAI46_02630 0.65 +0.5
567,577 + IAI46_02630 0.65 +0.1
567,589 - IAI46_02630 0.66 +0.5
567,589 - IAI46_02630 0.66 -0.6
567,596 + IAI46_02630 0.66 +0.8
567,597 - IAI46_02630 0.67 -0.2
567,597 - IAI46_02630 0.67 -0.6
567,971 - +0.6
568,022 + -0.5
568,022 + -0.1
568,023 - -0.3
568,024 + +0.3
568,024 + -0.6
568,024 + +0.7
568,024 + +0.7
568,024 + -0.3
568,024 + -0.4
568,024 + -0.5
568,024 + +1.1
568,024 + +0.0
568,025 - +0.4
568,025 - +0.4
568,025 - -0.5
568,064 + -0.6
568,065 - +0.3
568,065 - -1.5
568,065 - -0.5
568,068 - +0.7
568,068 - +1.0
568,111 + IAI46_02635 0.10 +0.2
568,111 + IAI46_02635 0.10 +0.3
568,111 + IAI46_02635 0.10 +0.5
568,111 + IAI46_02635 0.10 +0.0
568,112 - IAI46_02635 0.10 +0.0
568,112 - IAI46_02635 0.10 +0.1
568,112 - IAI46_02635 0.10 +0.5
568,182 + IAI46_02635 0.15 -0.7
568,182 + IAI46_02635 0.15 -0.0
568,225 + IAI46_02635 0.19 -1.0
568,225 + IAI46_02635 0.19 +0.1
568,225 + IAI46_02635 0.19 +0.5
568,251 - IAI46_02635 0.20 -0.9
568,422 - IAI46_02635 0.33 +0.5
568,466 - IAI46_02635 0.36 -1.0
568,523 - IAI46_02635 0.40 +0.1
568,523 - IAI46_02635 0.40 +0.6
568,681 + IAI46_02635 0.52 -0.2
568,681 + IAI46_02635 0.52 +0.1
568,681 + IAI46_02635 0.52 +0.4
568,681 + IAI46_02635 0.52 +1.4
568,681 + IAI46_02635 0.52 +0.4
568,682 - IAI46_02635 0.52 -0.1
568,682 - IAI46_02635 0.52 -0.3
568,682 - IAI46_02635 0.52 -0.5
568,706 - IAI46_02635 0.54 -0.4
568,779 + IAI46_02635 0.59 -0.1
568,779 + IAI46_02635 0.59 -0.5
568,780 - IAI46_02635 0.59 +0.6
568,780 - IAI46_02635 0.59 +0.9
568,958 + IAI46_02635 0.72 -0.9

Or see this region's nucleotide sequence