Strain Fitness in Serratia liquefaciens MT49 around IAI46_01150

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01140 and IAI46_01145 overlap by 1 nucleotidesIAI46_01145 and IAI46_01150 are separated by 35 nucleotidesIAI46_01150 and IAI46_01155 are separated by 22 nucleotides IAI46_01140: IAI46_01140 - Xaa-Pro dipeptidase, at 253,626 to 254,957 _01140 IAI46_01145: IAI46_01145 - IMPACT family protein, at 254,957 to 255,571 _01145 IAI46_01150: IAI46_01150 - Trk system potassium transporter TrkH, at 255,607 to 257,058 _01150 IAI46_01155: IAI46_01155 - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 257,081 to 257,614 _01155 Position (kb) 255 256 257 258Strain fitness (log2 ratio) -2 -1 0 1 2at 254.610 kb on - strand, within IAI46_01140at 254.659 kb on + strand, within IAI46_01140at 254.659 kb on + strand, within IAI46_01140at 254.660 kb on - strand, within IAI46_01140at 254.679 kb on - strand, within IAI46_01140at 254.696 kb on + strand, within IAI46_01140at 254.696 kb on + strand, within IAI46_01140at 254.696 kb on + strand, within IAI46_01140at 254.697 kb on - strand, within IAI46_01140at 254.697 kb on - strand, within IAI46_01140at 254.717 kb on + strand, within IAI46_01140at 254.717 kb on + strand, within IAI46_01140at 254.717 kb on + strand, within IAI46_01140at 254.717 kb on + strand, within IAI46_01140at 254.717 kb on + strand, within IAI46_01140at 254.717 kb on + strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.721 kb on + strand, within IAI46_01140at 254.722 kb on - strand, within IAI46_01140at 254.722 kb on - strand, within IAI46_01140at 254.722 kb on - strand, within IAI46_01140at 254.722 kb on - strand, within IAI46_01140at 254.749 kb on + strand, within IAI46_01140at 254.749 kb on + strand, within IAI46_01140at 254.749 kb on + strand, within IAI46_01140at 254.750 kb on - strand, within IAI46_01140at 254.788 kb on - strand, within IAI46_01140at 254.788 kb on - strand, within IAI46_01140at 254.788 kb on - strand, within IAI46_01140at 254.792 kb on + strand, within IAI46_01140at 254.875 kb on - strandat 254.900 kb on + strandat 254.967 kb on - strandat 255.081 kb on + strand, within IAI46_01145at 255.082 kb on - strand, within IAI46_01145at 255.082 kb on - strand, within IAI46_01145at 255.156 kb on + strand, within IAI46_01145at 255.156 kb on + strand, within IAI46_01145at 255.156 kb on + strand, within IAI46_01145at 255.202 kb on + strand, within IAI46_01145at 255.202 kb on + strand, within IAI46_01145at 255.203 kb on - strand, within IAI46_01145at 255.217 kb on + strand, within IAI46_01145at 255.217 kb on + strand, within IAI46_01145at 255.256 kb on - strand, within IAI46_01145at 255.256 kb on - strand, within IAI46_01145at 255.256 kb on - strand, within IAI46_01145at 255.260 kb on + strand, within IAI46_01145at 255.261 kb on - strand, within IAI46_01145at 255.261 kb on - strand, within IAI46_01145at 255.261 kb on - strand, within IAI46_01145at 255.297 kb on + strand, within IAI46_01145at 255.330 kb on + strand, within IAI46_01145at 255.330 kb on + strand, within IAI46_01145at 255.350 kb on + strand, within IAI46_01145at 255.351 kb on - strand, within IAI46_01145at 255.373 kb on + strand, within IAI46_01145at 255.373 kb on + strand, within IAI46_01145at 255.373 kb on + strand, within IAI46_01145at 255.373 kb on + strand, within IAI46_01145at 255.373 kb on + strand, within IAI46_01145at 255.374 kb on - strand, within IAI46_01145at 255.390 kb on - strand, within IAI46_01145at 255.390 kb on - strand, within IAI46_01145at 255.444 kb on + strand, within IAI46_01145at 255.455 kb on + strand, within IAI46_01145at 255.455 kb on + strand, within IAI46_01145at 255.455 kb on + strand, within IAI46_01145at 255.455 kb on + strand, within IAI46_01145at 255.486 kb on + strand, within IAI46_01145at 255.552 kb on + strandat 255.553 kb on - strandat 255.553 kb on - strandat 255.570 kb on - strandat 255.591 kb on + strandat 255.592 kb on - strandat 255.624 kb on + strandat 255.672 kb on + strandat 255.672 kb on + strandat 255.696 kb on - strandat 255.696 kb on - strandat 255.696 kb on - strandat 255.697 kb on + strandat 255.698 kb on - strandat 255.698 kb on - strandat 256.052 kb on + strand, within IAI46_01150at 256.087 kb on + strand, within IAI46_01150at 256.171 kb on + strand, within IAI46_01150at 256.171 kb on + strand, within IAI46_01150at 256.172 kb on - strand, within IAI46_01150at 256.238 kb on + strand, within IAI46_01150at 256.238 kb on + strand, within IAI46_01150at 256.239 kb on - strand, within IAI46_01150at 256.245 kb on + strand, within IAI46_01150at 256.246 kb on - strand, within IAI46_01150at 256.246 kb on - strand, within IAI46_01150at 256.278 kb on + strand, within IAI46_01150at 256.304 kb on - strand, within IAI46_01150at 256.329 kb on + strand, within IAI46_01150at 256.329 kb on + strand, within IAI46_01150at 256.329 kb on + strand, within IAI46_01150at 256.329 kb on + strand, within IAI46_01150at 256.330 kb on - strand, within IAI46_01150at 256.330 kb on - strand, within IAI46_01150at 256.330 kb on - strand, within IAI46_01150at 256.336 kb on - strand, within IAI46_01150at 256.359 kb on + strand, within IAI46_01150at 256.359 kb on + strand, within IAI46_01150at 256.359 kb on + strand, within IAI46_01150at 256.359 kb on + strand, within IAI46_01150at 256.359 kb on + strand, within IAI46_01150at 256.359 kb on + strand, within IAI46_01150at 256.360 kb on - strand, within IAI46_01150at 256.360 kb on - strand, within IAI46_01150at 256.360 kb on - strand, within IAI46_01150at 256.360 kb on - strand, within IAI46_01150at 256.363 kb on + strand, within IAI46_01150at 256.364 kb on - strand, within IAI46_01150at 256.478 kb on + strand, within IAI46_01150at 256.478 kb on + strand, within IAI46_01150at 256.478 kb on + strand, within IAI46_01150at 256.569 kb on + strand, within IAI46_01150at 256.570 kb on - strand, within IAI46_01150at 256.693 kb on + strand, within IAI46_01150at 256.694 kb on - strand, within IAI46_01150at 256.716 kb on - strand, within IAI46_01150at 256.734 kb on + strand, within IAI46_01150at 256.751 kb on + strand, within IAI46_01150at 256.947 kb on + strandat 256.947 kb on + strandat 256.948 kb on - strandat 256.948 kb on - strandat 256.948 kb on - strandat 256.951 kb on - strandat 256.951 kb on - strandat 257.016 kb on + strandat 257.065 kb on + strandat 257.065 kb on + strandat 257.065 kb on + strandat 257.065 kb on + strandat 257.597 kb on - strandat 257.603 kb on + strandat 257.604 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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254,610 - IAI46_01140 0.74 -0.1
254,659 + IAI46_01140 0.78 -0.5
254,659 + IAI46_01140 0.78 +0.6
254,660 - IAI46_01140 0.78 +1.5
254,679 - IAI46_01140 0.79 +0.2
254,696 + IAI46_01140 0.80 +0.2
254,696 + IAI46_01140 0.80 -0.4
254,696 + IAI46_01140 0.80 +0.5
254,697 - IAI46_01140 0.80 +0.4
254,697 - IAI46_01140 0.80 +0.2
254,717 + IAI46_01140 0.82 +0.5
254,717 + IAI46_01140 0.82 +0.5
254,717 + IAI46_01140 0.82 +0.1
254,717 + IAI46_01140 0.82 +0.7
254,717 + IAI46_01140 0.82 +0.8
254,717 + IAI46_01140 0.82 +1.0
254,718 - IAI46_01140 0.82 +0.0
254,718 - IAI46_01140 0.82 +0.5
254,718 - IAI46_01140 0.82 +0.4
254,718 - IAI46_01140 0.82 +1.0
254,718 - IAI46_01140 0.82 +1.0
254,718 - IAI46_01140 0.82 +1.5
254,718 - IAI46_01140 0.82 +0.2
254,718 - IAI46_01140 0.82 -0.0
254,718 - IAI46_01140 0.82 -0.0
254,718 - IAI46_01140 0.82 +0.8
254,718 - IAI46_01140 0.82 -1.2
254,718 - IAI46_01140 0.82 +0.3
254,718 - IAI46_01140 0.82 -0.5
254,718 - IAI46_01140 0.82 -0.1
254,718 - IAI46_01140 0.82 -0.3
254,721 + IAI46_01140 0.82 +0.7
254,722 - IAI46_01140 0.82 -0.1
254,722 - IAI46_01140 0.82 -0.4
254,722 - IAI46_01140 0.82 -0.1
254,722 - IAI46_01140 0.82 +0.6
254,749 + IAI46_01140 0.84 +0.3
254,749 + IAI46_01140 0.84 +0.6
254,749 + IAI46_01140 0.84 -0.7
254,750 - IAI46_01140 0.84 -1.7
254,788 - IAI46_01140 0.87 -0.5
254,788 - IAI46_01140 0.87 -0.4
254,788 - IAI46_01140 0.87 +0.1
254,792 + IAI46_01140 0.88 +0.2
254,875 - -1.1
254,900 + -1.6
254,967 - -1.2
255,081 + IAI46_01145 0.20 +0.0
255,082 - IAI46_01145 0.20 +0.4
255,082 - IAI46_01145 0.20 +1.0
255,156 + IAI46_01145 0.32 -0.2
255,156 + IAI46_01145 0.32 +0.1
255,156 + IAI46_01145 0.32 +0.4
255,202 + IAI46_01145 0.40 -0.1
255,202 + IAI46_01145 0.40 -0.8
255,203 - IAI46_01145 0.40 +0.7
255,217 + IAI46_01145 0.42 +0.0
255,217 + IAI46_01145 0.42 +0.2
255,256 - IAI46_01145 0.49 +0.5
255,256 - IAI46_01145 0.49 -0.1
255,256 - IAI46_01145 0.49 -1.8
255,260 + IAI46_01145 0.49 -0.3
255,261 - IAI46_01145 0.49 +0.9
255,261 - IAI46_01145 0.49 +0.3
255,261 - IAI46_01145 0.49 -1.0
255,297 + IAI46_01145 0.55 -0.5
255,330 + IAI46_01145 0.61 +0.4
255,330 + IAI46_01145 0.61 +0.2
255,350 + IAI46_01145 0.64 +0.5
255,351 - IAI46_01145 0.64 +0.4
255,373 + IAI46_01145 0.68 -0.2
255,373 + IAI46_01145 0.68 +0.1
255,373 + IAI46_01145 0.68 +0.5
255,373 + IAI46_01145 0.68 +0.3
255,373 + IAI46_01145 0.68 +0.0
255,374 - IAI46_01145 0.68 -0.3
255,390 - IAI46_01145 0.70 +0.2
255,390 - IAI46_01145 0.70 -1.3
255,444 + IAI46_01145 0.79 +0.5
255,455 + IAI46_01145 0.81 +0.8
255,455 + IAI46_01145 0.81 +0.9
255,455 + IAI46_01145 0.81 +1.8
255,455 + IAI46_01145 0.81 +0.0
255,486 + IAI46_01145 0.86 +0.4
255,552 + +0.6
255,553 - +1.1
255,553 - -0.4
255,570 - -0.5
255,591 + +0.2
255,592 - +0.1
255,624 + +0.1
255,672 + -0.7
255,672 + -0.2
255,696 - -1.4
255,696 - +0.1
255,696 - -0.1
255,697 + +0.2
255,698 - +0.9
255,698 - +0.1
256,052 + IAI46_01150 0.31 -1.0
256,087 + IAI46_01150 0.33 +0.6
256,171 + IAI46_01150 0.39 -0.5
256,171 + IAI46_01150 0.39 +0.3
256,172 - IAI46_01150 0.39 +0.1
256,238 + IAI46_01150 0.43 -0.3
256,238 + IAI46_01150 0.43 -0.8
256,239 - IAI46_01150 0.44 -0.6
256,245 + IAI46_01150 0.44 -1.4
256,246 - IAI46_01150 0.44 -0.6
256,246 - IAI46_01150 0.44 +0.2
256,278 + IAI46_01150 0.46 -1.4
256,304 - IAI46_01150 0.48 +0.3
256,329 + IAI46_01150 0.50 +0.4
256,329 + IAI46_01150 0.50 +1.0
256,329 + IAI46_01150 0.50 -0.6
256,329 + IAI46_01150 0.50 -0.4
256,330 - IAI46_01150 0.50 -0.1
256,330 - IAI46_01150 0.50 +0.3
256,330 - IAI46_01150 0.50 +0.8
256,336 - IAI46_01150 0.50 +0.7
256,359 + IAI46_01150 0.52 -2.1
256,359 + IAI46_01150 0.52 +1.1
256,359 + IAI46_01150 0.52 +0.2
256,359 + IAI46_01150 0.52 -0.0
256,359 + IAI46_01150 0.52 +1.3
256,359 + IAI46_01150 0.52 +0.5
256,360 - IAI46_01150 0.52 -0.3
256,360 - IAI46_01150 0.52 +0.4
256,360 - IAI46_01150 0.52 -0.4
256,360 - IAI46_01150 0.52 +0.2
256,363 + IAI46_01150 0.52 +0.6
256,364 - IAI46_01150 0.52 +0.5
256,478 + IAI46_01150 0.60 -0.4
256,478 + IAI46_01150 0.60 -0.4
256,478 + IAI46_01150 0.60 -0.7
256,569 + IAI46_01150 0.66 +0.3
256,570 - IAI46_01150 0.66 +0.4
256,693 + IAI46_01150 0.75 +0.8
256,694 - IAI46_01150 0.75 +0.5
256,716 - IAI46_01150 0.76 +0.2
256,734 + IAI46_01150 0.78 -1.9
256,751 + IAI46_01150 0.79 -0.8
256,947 + +0.9
256,947 + +0.2
256,948 - -0.0
256,948 - +1.0
256,948 - -0.2
256,951 - +1.6
256,951 - +0.4
257,016 + +0.7
257,065 + -0.2
257,065 + +0.3
257,065 + +0.3
257,065 + +1.3
257,597 - +0.8
257,603 + +0.2
257,604 - -0.2

Or see this region's nucleotide sequence