Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00990 and IAI46_00995 are separated by 162 nucleotides IAI46_00995 and IAI46_01000 overlap by 4 nucleotides IAI46_01000 and IAI46_01005 are separated by 16 nucleotides
IAI46_00990: IAI46_00990 - sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB, at 221,676 to 222,995
_00990
IAI46_00995: IAI46_00995 - sn-glycerol-3-phosphate ABC transporter permease UgpA, at 223,158 to 224,045
_00995
IAI46_01000: IAI46_01000 - sn-glycerol-3-phosphate ABC transporter permease UgpE, at 224,042 to 224,887
_01000
IAI46_01005: IAI46_01005 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 224,904 to 225,980
_01005
Position (kb) 223
224
225 Strain fitness (log2 ratio) -2
-1
0
1
2 at 222.244 kb on - strand, within IAI46_00990 at 222.381 kb on - strand, within IAI46_00990 at 222.423 kb on + strand, within IAI46_00990 at 222.423 kb on + strand, within IAI46_00990 at 222.424 kb on - strand, within IAI46_00990 at 222.424 kb on - strand, within IAI46_00990 at 222.519 kb on + strand, within IAI46_00990 at 222.520 kb on - strand, within IAI46_00990 at 222.534 kb on + strand, within IAI46_00990 at 222.534 kb on + strand, within IAI46_00990 at 222.534 kb on + strand, within IAI46_00990 at 222.535 kb on - strand, within IAI46_00990 at 222.535 kb on - strand, within IAI46_00990 at 222.535 kb on - strand, within IAI46_00990 at 222.555 kb on + strand, within IAI46_00990 at 222.556 kb on - strand, within IAI46_00990 at 222.642 kb on + strand, within IAI46_00990 at 222.642 kb on + strand, within IAI46_00990 at 222.642 kb on + strand, within IAI46_00990 at 222.642 kb on + strand, within IAI46_00990 at 222.642 kb on + strand, within IAI46_00990 at 222.643 kb on - strand, within IAI46_00990 at 222.643 kb on - strand, within IAI46_00990 at 222.643 kb on - strand, within IAI46_00990 at 222.643 kb on - strand, within IAI46_00990 at 222.643 kb on - strand, within IAI46_00990 at 222.643 kb on - strand, within IAI46_00990 at 222.643 kb on - strand, within IAI46_00990 at 222.644 kb on + strand, within IAI46_00990 at 222.741 kb on + strand, within IAI46_00990 at 222.741 kb on + strand, within IAI46_00990 at 222.742 kb on - strand, within IAI46_00990 at 222.742 kb on - strand, within IAI46_00990 at 222.768 kb on + strand, within IAI46_00990 at 222.768 kb on + strand, within IAI46_00990 at 222.769 kb on - strand, within IAI46_00990 at 222.769 kb on - strand, within IAI46_00990 at 222.769 kb on - strand, within IAI46_00990 at 222.857 kb on + strand, within IAI46_00990 at 222.857 kb on + strand, within IAI46_00990 at 222.857 kb on + strand, within IAI46_00990 at 222.857 kb on + strand, within IAI46_00990 at 222.857 kb on + strand, within IAI46_00990 at 222.858 kb on - strand, within IAI46_00990 at 222.947 kb on - strand at 222.989 kb on + strand at 222.990 kb on - strand at 222.990 kb on - strand at 222.993 kb on + strand at 222.993 kb on + strand at 222.994 kb on - strand at 222.994 kb on - strand at 222.994 kb on - strand at 222.996 kb on + strand at 222.996 kb on + strand at 222.997 kb on - strand at 222.997 kb on - strand at 223.003 kb on + strand at 223.003 kb on + strand at 223.004 kb on - strand at 223.004 kb on - strand at 223.004 kb on - strand at 223.004 kb on - strand at 223.004 kb on - strand at 223.056 kb on + strand at 223.056 kb on + strand at 223.056 kb on + strand at 223.056 kb on + strand at 223.057 kb on - strand at 223.057 kb on - strand at 223.057 kb on - strand at 223.057 kb on - strand at 223.097 kb on - strand at 223.154 kb on - strand at 223.201 kb on - strand at 223.201 kb on - strand at 223.201 kb on - strand at 223.201 kb on - strand at 223.201 kb on - strand at 223.201 kb on - strand at 223.208 kb on - strand at 223.208 kb on - strand at 223.229 kb on + strand at 223.356 kb on + strand, within IAI46_00995 at 223.356 kb on + strand, within IAI46_00995 at 223.356 kb on + strand, within IAI46_00995 at 223.356 kb on + strand, within IAI46_00995 at 223.357 kb on - strand, within IAI46_00995 at 223.357 kb on - strand, within IAI46_00995 at 223.357 kb on - strand, within IAI46_00995 at 223.357 kb on - strand, within IAI46_00995 at 223.359 kb on + strand, within IAI46_00995 at 223.359 kb on + strand, within IAI46_00995 at 223.374 kb on + strand, within IAI46_00995 at 223.374 kb on + strand, within IAI46_00995 at 223.375 kb on - strand, within IAI46_00995 at 223.453 kb on - strand, within IAI46_00995 at 223.453 kb on - strand, within IAI46_00995 at 223.500 kb on + strand, within IAI46_00995 at 223.501 kb on - strand, within IAI46_00995 at 223.671 kb on + strand, within IAI46_00995 at 223.671 kb on + strand, within IAI46_00995 at 223.671 kb on + strand, within IAI46_00995 at 223.673 kb on + strand, within IAI46_00995 at 223.673 kb on + strand, within IAI46_00995 at 223.673 kb on + strand, within IAI46_00995 at 223.830 kb on + strand, within IAI46_00995 at 223.830 kb on + strand, within IAI46_00995 at 223.830 kb on + strand, within IAI46_00995 at 223.831 kb on - strand, within IAI46_00995 at 223.831 kb on - strand, within IAI46_00995 at 223.831 kb on - strand, within IAI46_00995 at 223.845 kb on - strand, within IAI46_00995 at 223.885 kb on + strand, within IAI46_00995 at 223.885 kb on + strand, within IAI46_00995 at 223.908 kb on + strand, within IAI46_00995 at 223.908 kb on + strand, within IAI46_00995 at 223.909 kb on - strand, within IAI46_00995 at 223.917 kb on + strand, within IAI46_00995 at 224.027 kb on + strand at 224.027 kb on + strand at 224.028 kb on - strand at 224.083 kb on - strand at 224.083 kb on - strand at 224.083 kb on - strand at 224.083 kb on - strand at 224.123 kb on + strand at 224.123 kb on + strand at 224.124 kb on - strand at 224.124 kb on - strand at 224.221 kb on + strand, within IAI46_01000 at 224.221 kb on + strand, within IAI46_01000 at 224.222 kb on - strand, within IAI46_01000 at 224.248 kb on + strand, within IAI46_01000 at 224.249 kb on - strand, within IAI46_01000 at 224.249 kb on - strand, within IAI46_01000 at 224.249 kb on - strand, within IAI46_01000 at 224.249 kb on - strand, within IAI46_01000 at 224.249 kb on - strand, within IAI46_01000 at 224.249 kb on - strand, within IAI46_01000 at 224.339 kb on + strand, within IAI46_01000 at 224.340 kb on - strand, within IAI46_01000 at 224.340 kb on - strand, within IAI46_01000 at 224.340 kb on - strand, within IAI46_01000 at 224.340 kb on - strand, within IAI46_01000 at 224.340 kb on - strand, within IAI46_01000 at 224.351 kb on + strand, within IAI46_01000 at 224.352 kb on - strand, within IAI46_01000 at 224.372 kb on - strand, within IAI46_01000 at 224.392 kb on - strand, within IAI46_01000 at 224.425 kb on + strand, within IAI46_01000 at 224.446 kb on + strand, within IAI46_01000 at 224.473 kb on + strand, within IAI46_01000 at 224.474 kb on + strand, within IAI46_01000 at 224.474 kb on + strand, within IAI46_01000 at 224.539 kb on + strand, within IAI46_01000 at 224.539 kb on + strand, within IAI46_01000 at 224.665 kb on + strand, within IAI46_01000 at 224.684 kb on + strand, within IAI46_01000 at 224.685 kb on - strand, within IAI46_01000 at 224.815 kb on - strand at 224.940 kb on + strand at 224.940 kb on + strand at 224.941 kb on - strand at 224.941 kb on - strand at 224.949 kb on - strand at 224.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 222,244 - IAI46_00990 0.43 -1.0 222,381 - IAI46_00990 0.53 -0.0 222,423 + IAI46_00990 0.57 +0.2 222,423 + IAI46_00990 0.57 +2.0 222,424 - IAI46_00990 0.57 +0.7 222,424 - IAI46_00990 0.57 -0.1 222,519 + IAI46_00990 0.64 +1.2 222,520 - IAI46_00990 0.64 +0.4 222,534 + IAI46_00990 0.65 +0.5 222,534 + IAI46_00990 0.65 +0.6 222,534 + IAI46_00990 0.65 +0.3 222,535 - IAI46_00990 0.65 +0.2 222,535 - IAI46_00990 0.65 -0.2 222,535 - IAI46_00990 0.65 -0.1 222,555 + IAI46_00990 0.67 +0.3 222,556 - IAI46_00990 0.67 -0.7 222,642 + IAI46_00990 0.73 -0.5 222,642 + IAI46_00990 0.73 -0.4 222,642 + IAI46_00990 0.73 -0.3 222,642 + IAI46_00990 0.73 +0.9 222,642 + IAI46_00990 0.73 -0.2 222,643 - IAI46_00990 0.73 +0.0 222,643 - IAI46_00990 0.73 +0.3 222,643 - IAI46_00990 0.73 +1.3 222,643 - IAI46_00990 0.73 +0.8 222,643 - IAI46_00990 0.73 -0.2 222,643 - IAI46_00990 0.73 -0.8 222,643 - IAI46_00990 0.73 -0.1 222,644 + IAI46_00990 0.73 -0.4 222,741 + IAI46_00990 0.81 -0.8 222,741 + IAI46_00990 0.81 -1.3 222,742 - IAI46_00990 0.81 -0.2 222,742 - IAI46_00990 0.81 +0.7 222,768 + IAI46_00990 0.83 -1.7 222,768 + IAI46_00990 0.83 -0.4 222,769 - IAI46_00990 0.83 +0.4 222,769 - IAI46_00990 0.83 -0.1 222,769 - IAI46_00990 0.83 -0.2 222,857 + IAI46_00990 0.89 -0.2 222,857 + IAI46_00990 0.89 -0.4 222,857 + IAI46_00990 0.89 +0.1 222,857 + IAI46_00990 0.89 -0.0 222,857 + IAI46_00990 0.89 +0.3 222,858 - IAI46_00990 0.90 -0.0 222,947 - -0.2 222,989 + +0.7 222,990 - +0.5 222,990 - +0.7 222,993 + -0.1 222,993 + -1.1 222,994 - +0.6 222,994 - -1.3 222,994 - +0.7 222,996 + -0.3 222,996 + -1.9 222,997 - -0.7 222,997 - +0.3 223,003 + +0.6 223,003 + +0.7 223,004 - +0.2 223,004 - -0.1 223,004 - -0.1 223,004 - -0.1 223,004 - -0.1 223,056 + -0.2 223,056 + -0.3 223,056 + +0.3 223,056 + +0.1 223,057 - +0.5 223,057 - +0.1 223,057 - -0.2 223,057 - -1.1 223,097 - +2.6 223,154 - -0.0 223,201 - +1.5 223,201 - -0.5 223,201 - +0.7 223,201 - -0.5 223,201 - +0.3 223,201 - -1.6 223,208 - +0.9 223,208 - -0.1 223,229 + +0.2 223,356 + IAI46_00995 0.22 -0.0 223,356 + IAI46_00995 0.22 +0.5 223,356 + IAI46_00995 0.22 -0.2 223,356 + IAI46_00995 0.22 +0.4 223,357 - IAI46_00995 0.22 -0.2 223,357 - IAI46_00995 0.22 -1.6 223,357 - IAI46_00995 0.22 -0.2 223,357 - IAI46_00995 0.22 +0.6 223,359 + IAI46_00995 0.23 -0.5 223,359 + IAI46_00995 0.23 -1.0 223,374 + IAI46_00995 0.24 -0.2 223,374 + IAI46_00995 0.24 -0.7 223,375 - IAI46_00995 0.24 +0.3 223,453 - IAI46_00995 0.33 +0.3 223,453 - IAI46_00995 0.33 +0.5 223,500 + IAI46_00995 0.39 -0.3 223,501 - IAI46_00995 0.39 +1.4 223,671 + IAI46_00995 0.58 -1.1 223,671 + IAI46_00995 0.58 +0.0 223,671 + IAI46_00995 0.58 +0.3 223,673 + IAI46_00995 0.58 +0.1 223,673 + IAI46_00995 0.58 +1.6 223,673 + IAI46_00995 0.58 +0.2 223,830 + IAI46_00995 0.76 +1.4 223,830 + IAI46_00995 0.76 -0.6 223,830 + IAI46_00995 0.76 +0.4 223,831 - IAI46_00995 0.76 +0.5 223,831 - IAI46_00995 0.76 +0.6 223,831 - IAI46_00995 0.76 -0.5 223,845 - IAI46_00995 0.77 +0.3 223,885 + IAI46_00995 0.82 +0.4 223,885 + IAI46_00995 0.82 +0.5 223,908 + IAI46_00995 0.84 +0.5 223,908 + IAI46_00995 0.84 -0.7 223,909 - IAI46_00995 0.85 -0.3 223,917 + IAI46_00995 0.85 -0.1 224,027 + +0.1 224,027 + -0.1 224,028 - -0.6 224,083 - -0.5 224,083 - -0.0 224,083 - +0.1 224,083 - -0.6 224,123 + -0.3 224,123 + +0.3 224,124 - -0.3 224,124 - -0.7 224,221 + IAI46_01000 0.21 -0.6 224,221 + IAI46_01000 0.21 +0.2 224,222 - IAI46_01000 0.21 +0.1 224,248 + IAI46_01000 0.24 -0.3 224,249 - IAI46_01000 0.24 +0.3 224,249 - IAI46_01000 0.24 +0.8 224,249 - IAI46_01000 0.24 +0.1 224,249 - IAI46_01000 0.24 +0.3 224,249 - IAI46_01000 0.24 -0.6 224,249 - IAI46_01000 0.24 -0.5 224,339 + IAI46_01000 0.35 +0.9 224,340 - IAI46_01000 0.35 -0.0 224,340 - IAI46_01000 0.35 +0.3 224,340 - IAI46_01000 0.35 +0.1 224,340 - IAI46_01000 0.35 -0.3 224,340 - IAI46_01000 0.35 -0.8 224,351 + IAI46_01000 0.37 -1.6 224,352 - IAI46_01000 0.37 -0.9 224,372 - IAI46_01000 0.39 +0.2 224,392 - IAI46_01000 0.41 +0.5 224,425 + IAI46_01000 0.45 +0.5 224,446 + IAI46_01000 0.48 +1.3 224,473 + IAI46_01000 0.51 +0.5 224,474 + IAI46_01000 0.51 +0.3 224,474 + IAI46_01000 0.51 -0.0 224,539 + IAI46_01000 0.59 -1.1 224,539 + IAI46_01000 0.59 -0.6 224,665 + IAI46_01000 0.74 +0.4 224,684 + IAI46_01000 0.76 +1.2 224,685 - IAI46_01000 0.76 +0.3 224,815 - -0.0 224,940 + +0.7 224,940 + -0.3 224,941 - -0.2 224,941 - +0.5 224,949 - +0.6 224,949 - -0.1
Or see this region's nucleotide sequence